RNA id: TU1963839


Basic Information

Item Value
RNA id TU1963839
length 1101
RNA type TUCP
GC content 0.44
exon number 5
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCATGACTGAGAGCTGTTCTTCATGACAacagaacccacaacaaccatgactTTTATCACCATCTTCATCTGGACACTTGCTTTCTACATACAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCGGTACTGAGATCTGTTCTTCATGACAacagaacccacaacaaccatgactTTTATCACCATATTCATCTGGACATTTGTTTTCTACATACAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCGGTAGTGAAAGCTGTTCTCCCAGAACAGACAGTCTCTCTGAACTGTAAAACCAGCAGTAATGTGTATTCTAATAACTACCTAGCCTGGTACCAACAGAAACCTGGAGGAGCTCCTAAACTCCTTATTTACCGTGCTACAACACTTCAGTCTGGGACTCCATCTAGATTCAGTGgcagtggatctgggagtgacttcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagAGTTTCCACCTTCCCAACAGTGTCTGGGTGTTCACACAGTGATACAGAGCCGTACAAaaacctccctcagtcagactgtaCAGTGACTGTACTGATACAGCTGGGACCTACTGCAGGTGCTGAGGGGAGGAGATGATCCAGTACAATGACTTGTGTAGTAGACCTGAACAACAATAGAGTCAAACCAAAGCTATGTCTAGAAGACCTTACATCATAACTGATCACTAAATGTTTCTCCTGAACATTAACTACATGTTGACTCTGTTAAGTAACCATCAACCAATCTGAATGGAGATATTGTGCAATTATCAAAACCCCTAAAGATGACTTGTGTTTTGAAAAGCTAGAATTCAATCAACATGATTCAAACAGATACAATAAAGCCACTAAACATTACCCATACATCCTCCCTCACACTACTGTGGTAGTTCCAGAGAGCAGCAGGTGATGCAGGAGACTAGAGACGTCAGAGCTCTGGAGATCTCCCTTttagatcagtcagtcagctgtATCACAGACTGCAGTTACTGAGCCTGACCACTGGAGGGAGACATAAAGCAGCTACTATCTGGTCTAATAACACAGTAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963911 lncRNA upstream 25262 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 69932 19360186 ~ 19360889 (+) True G1714126
TU1963802 lncRNA upstream 75929 19353880 ~ 19354892 (+) True G1714082
TU1963810 lncRNA upstream 89402 19340898 ~ 19341419 (+) False G1714087
TU1964002 lncRNA downstream 13462 19631947 ~ 19727761 (+) True G1714184
TU1963820 lncRNA downstream 39384 19657869 ~ 19706090 (+) False G1714090
TU1963831 lncRNA downstream 39384 19657869 ~ 19754609 (+) False G1714090
TU1963849 lncRNA downstream 39384 19657869 ~ 19722494 (+) False G1714090
TU1964015 lncRNA downstream 59452 19677937 ~ 19683034 (+) False G1714196
XR_005038546.1 mRNA upstream 42749 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 93170 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 124738 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA upstream 124738 19302499 ~ 19306083 (+) True bik
XR_005038545.1 mRNA upstream 151786 19260745 ~ 19279035 (+) True LOC118942896
XR_005038547.1 mRNA downstream 90729 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 123639 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 123640 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 137424 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 137424 19755909 ~ 19761293 (+) False LOC110499934
TU1962997 other upstream 693385 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 929947 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 1163313 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1762235 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 2487032 16914220 ~ 16943789 (+) False LOC110501009
TU1964921 other downstream 490713 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 939937 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1380113 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2557478 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 3100434 22718919 ~ 22721074 (+) False G1717516

Expression Profile