RNA id: TU1963835


Basic Information

Item Value
RNA id TU1963835
length 2695
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGTTGGTTAGGgctctcgtaagtaagcatttctctgtaaggtctgttgtattcggcgcatgtgactagtaacatttgatttgatttgctggttgAAGATGATGTGGTTTCAAGTGAGAACATAAATAACTAAGCAATGACATTTAGGTCTGATATTTTTCAAAGAAACTGTGAATCAGACTTTATTAATGTATGTCTATACCATTCAACAACATTTAAGACTGCAGTCAAATTATTAAAAGAGACAACAGAAATATGTGTTCCAAAGGGAAATCTTTATTTTCATCTATTCATCAAAGCATCAAAGCAAACATTCCTACAGTATCTAATAGTAACAAAACAGAACTCATCAAATCTAATACCGATTCAATCTCAGTCTACAGAGAGGACTGACGCATGAACTCAAGCAAAGCCCCCTGTTACTCGACATGTCAGTGATCAAAAGACAGAGAACATCTGATCTCAGAACAGAGTCAAAGCAGAGGAACCAGCAGCCTCTCTCCACAGGGGTGTGTGACTAGGGGGCCTAACAGTCAGCCCTCCTCAAGGtcttggtgactggagtctgggAATTCTGCTGAGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCAGGCCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGGCCATCCTTCTCCAGGACCCTAGAACTGGTCCCCTGCTTCTGGCTGGTCCCGTCCACTTTCCATCTTATGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACACGTCAGTGTGGCTGTTGTTGTACTGGACAGCTCCTCACTAGAGGGGGGCAGGACGGTGAGGGTGGGGGCACTGTTACCTGGAACAAACAGAATACATCAACTAAGTAATTACAACAAGTACAGCAACACTAAGAGATTATCTCCATTAAGGTCCACAACCAAATAAAGTGAATTGGAAATGCCATCTAAATATGAATGTAGAAGTTGGactgttgaaaagatttggaaaaAACACTAAAGTAATAGGATACAAAGCAGATTTATGAACCAAACAAGTATAAAGTGGTTAAATAACTAGAGTTACTAGTCATATGGTGTCAGTTATACATGTTATACAGATATTGTTTAGGAATGGATCTGATCAGAACAGCCAAGTCATATTAATAGTATTTACATCACATATCAAACATGTTGGATTATGAAGTCAGTTACAACCATAACTGAGATCCTTTGTCTTCacactaacagtgaagtctaccATGAACAGAATGCAACAATGATGAATACCATATAAAATACCATTAGTTATTATACCAGCATTAGGAGTTATATTCTGCAATTATACAAATAAGACGTATTTAAACCTACAATTTATCATtttgattaaataaatatttatttgaatGAAGGCTCATTCAAAATCTAAATTTAACCAAAAATATTTGAGTTAAAgataataaaaatataaataaaaaatggcacacaaacagtaatacacaatgcaacAACTATATTCCATATTATTAAATATTTATCATACTGGAACTCTCCTCTGCAATCCATCAAACCACACATTTAAATAAACACCTACATTTGAACATGTTAtttaaataacatttcatttgaaagaaGGCTTAGTCAAAAgtaatacaaaaaatatatttttttaggaaGGAAAATATGAAAAATCACAATATATTCATATAGACGAAGTTTCACAGAGtaaaatacccccaaaaataATCAGAAAGAAATATCAAAGAGCGTGTTACTTACTTCCAACATCTAGTCTGGTGCCGCTACCAAAAGTGTACCACAGTGATACAATCCCTATTACTGCTGGTACAACAACCTCCTGCATGTTTGGCACTCTTCATTTCATTAGACTGTGGTTCAAATAATTAACTCTACTATAGTATGAATACATTTCAGAAATGAATTATTCTACTCAATTAGAAATAAAGTGTTTTTCATGTTGATTTCCTTAACATGGACCAAACCTGACTTTTTCTTGTACATCTCCTACTACTGTAGGTGCAGCATGTTTATTCATACAACTAATCTAAAATGTAGGCGAATCACTTCATAGTTTAAAGGCAGGTCATATTTGATTAGATGTAATAACATTCATATTAAAAGTGGCCATAGTATGTGTAGGGCTTGTGTATTTTGTTTAAATCATCTAAAAAAGTTCATTTGAAAAATCCTCAATATCAAGTCAAAATGTATAGAGAAATTGAAACACAACATCAAAAGTTGAATAAATAGTTTGGAataaataatttgttctttactTACTTCCAACatcatgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctcccccgctttcccccagctgttccttgtctcctcttgactacctcgtcaccccttctcccacctgttccccttttccctctgattaggtccctatatctctctctgtttctgctcctgtctttgtcggattcttgtttgttgtgtttcatgcctgagccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctacctatgtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcactcaccgtaacagaagaatccgaccaagaatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963949 lncRNA upstream 11300 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 17140 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA upstream 45345 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 90015 19360186 ~ 19360889 (+) True G1714126
TU1963802 lncRNA upstream 96012 19353880 ~ 19354892 (+) True G1714082
TU1964015 lncRNA downstream 17624 19677937 ~ 19683034 (+) False G1714196
TU1964016 lncRNA downstream 17624 19677937 ~ 19683034 (+) True G1714196
TU1963929 lncRNA downstream 28283 19688596 ~ 19689332 (+) True G1714115
TU1964031 lncRNA downstream 52392 19712705 ~ 19735869 (+) True G1714210
TU1963862 lncRNA downstream 59737 19720050 ~ 19733117 (+) True G1714090
XM_036958467.1 mRNA upstream 19405 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 62832 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 113253 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 144821 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA upstream 144821 19302499 ~ 19306083 (+) True bik
XR_005038547.1 mRNA downstream 48901 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 81811 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 81812 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 95596 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 95596 19755909 ~ 19761293 (+) False LOC110499934
TU1963841 other upstream 4053 19384972 ~ 19446851 (+) False G1714090
TU1963844 other upstream 4053 19430723 ~ 19446851 (+) False G1714090
TU1962997 other upstream 713468 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 950030 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 1183396 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1964921 other downstream 448885 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 898109 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1338285 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2515650 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 3058606 22718919 ~ 22721074 (+) False G1717516

Expression Profile