RNA id: TU1963819


Basic Information

Item Value
RNA id TU1963819
length 732
RNA type TUCP
GC content 0.43
exon number 3
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGATACTACTTGAAACCTGAAATAGATTTGAAACATTAATTTGCATAATGCATCTGCTCCACTGCTCTAAGAGTATTTATATCCCTGTGAGTTTAACACTTCATGACTGAGATCTGTTCTTCATGACAacagaacccacaacaaccatgactTTTATCACCATATTCATCTGGACATTTGTTTTCTACATACAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCGGTAGTGAAAGCTGTTCTCCCAGAACAGACAGTCTCTCTGAACTGTAAAACCAGCAGTAATGTGTATTCTAATAACTACCTAGCCTGGTACCAACAGAAACCTGGAGGAGCTCCTAAACTCCTTATTTACCGTGCTACAACACTTCAGTCTGGGACTCCATCTAGATTCAGTGgcagtggatctgggagtgacttcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagAGTTTCCACCTTCCCAACAGTGTCTGGGTTTCCTCTTTTGGTTGTGCCCCAGAGACATTTGATATTGTTGGGAACTTACGGTTATTGCCTCAGTTTAATAAAAGGGATCCTGAGACATTATTTTCGTTGTTTGAGCGCGTTGCTGACGCTAGGAGTTGGCCTGATTCTGACCGTACTTTAATGTTGCAGTGTGTGCTGACTGGTAAAGCGCAGGAAGCAAATTCAGCTCTTAGTGTACACGACAGTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963949 lncRNA upstream 25278 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 31118 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA upstream 59323 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 103993 19360186 ~ 19360889 (+) True G1714126
TU1963802 lncRNA upstream 109990 19353880 ~ 19354892 (+) True G1714082
TU1963966 lncRNA downstream 3140 19475896 ~ 19478051 (+) True G1714151
TU1963898 lncRNA downstream 11311 19484067 ~ 19601903 (+) False G1714090
TU1963899 lncRNA downstream 11311 19484067 ~ 19512304 (+) False G1714090
TU1963970 lncRNA downstream 15044 19487800 ~ 19533266 (+) True G1714154
TU1963846 lncRNA downstream 37330 19510086 ~ 19638888 (+) False G1714090
XM_036958467.1 mRNA upstream 33383 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 76810 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 127231 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 158799 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 236458 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 269368 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 269369 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 283153 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 283153 19755909 ~ 19761293 (+) False LOC110499934
TU1963841 other upstream 18031 19384972 ~ 19446851 (+) False G1714090
TU1963844 other upstream 18031 19430723 ~ 19446851 (+) False G1714090
TU1962997 other upstream 727446 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 964008 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 1197374 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1963826 other downstream 13858 19486614 ~ 19528131 (+) False G1714090
TU1963821 other downstream 25372 19498128 ~ 19499223 (+) False G1714090
TU1963834 other downstream 107366 19580122 ~ 19587820 (+) False G1714090
TU1963853 other downstream 129705 19602461 ~ 19623914 (+) False G1714090
TU1963818 other downstream 144638 19617394 ~ 19623914 (+) False G1714090

Expression Profile