RNA id: TU1963898


Basic Information

Item Value
RNA id TU1963898
length 1013
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTGTTCCAAAGGGAAATCTTTATTTTCATCTATTCATCAAAGCATCAAAGCAAACATTCCTACAGTATCTAATAGTAACAAAACAGAGCTCATCAAATCTAACACCGATTCAATCTCAGTCTACAGAGAGGATTGACACATGAACTCAAGCAAAGCCCCCTGTTAGTCAGTGATCAAAAGACAGAGAACATCTGATCTCAGGACAGAGTCAATGCAGAGGAACCAGCAGCCTCTCTCCACAGGGGTGTGTGACTAGGGGGCCTACCCAGAACAGTCAGCCCTCCTCAAGGtcttggtgactggagtctgggAATTCTGCTGGGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCTGGCCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGGCCATCCTTCTCCAGGACCCCGGGACTGGTCTTCTGGTTGTTGCTGGTCCCGTCCACTTTCCAGCTCAAGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACACGTCAGTGTGGCTGTTGTTGTACTGGACAGCTCCTCACTAGAGGGGGGCAGGACGGTGAGGGTGGGGGCACTGTTACTTGTGATGCTGCAGCTGTTACAGTGAAGATCACTCATACAGAATCATAATCAACACTAATACACTTTAACATCTTCCAGGTAGAACAAACACTTCATATAAGCTGTTTCTAGATAATACAAATATGAATTGTATCTTAAATCCAGATCTGAGTCATTTTTCCTTCCTCTGTGTATCAGGTTCTTCTAGTCTGGAGGTACAGTCCAGCATTAGATCAGTGTTGCTAGTATTCCTCCATATTGTCCATATGaaagacaacagcagcagcagtagtgataGTGATCCATGTTGTATAttcctttattaaacatgttgatctCACATTTAACAGTGGTGGTAAAGTCACAGAGGACAGACAACACTACCAGAGGAATCCTACCAGCTTTAGTTTAGAGAAGTGTTCACTAACTGATTAGAGGAACTTACATGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963966 lncRNA upstream 6016 19475896 ~ 19478051 (+) True G1714151
TU1963949 lncRNA upstream 44463 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 50303 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA upstream 78508 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 123178 19360186 ~ 19360889 (+) True G1714126
TU1963866 lncRNA downstream 2267 19604170 ~ 19660313 (+) False G1714090
TU1963879 lncRNA downstream 2267 19604170 ~ 19699778 (+) False G1714090
TU1963885 lncRNA downstream 2267 19604170 ~ 19723557 (+) False G1714090
TU1964002 lncRNA downstream 30044 19631947 ~ 19727761 (+) True G1714184
TU1963820 lncRNA downstream 55966 19657869 ~ 19706090 (+) False G1714090
XM_036958467.1 mRNA upstream 52568 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 95995 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 146416 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 177984 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 107311 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 140221 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 140222 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 154006 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 154006 19755909 ~ 19761293 (+) False LOC110499934
TU1963881 other upstream 11311 19460677 ~ 19472756 (+) False G1714090
TU1963819 other upstream 11311 19464882 ~ 19472756 (+) False G1714090
TU1963841 other upstream 37216 19384972 ~ 19446851 (+) False G1714090
TU1963844 other upstream 37216 19430723 ~ 19446851 (+) False G1714090
TU1962997 other upstream 746631 18734791 ~ 18737436 (+) True G1713384
TU1963853 other downstream 558 19602461 ~ 19623914 (+) False G1714090
TU1963818 other downstream 15491 19617394 ~ 19623914 (+) False G1714090
TU1964921 other downstream 507295 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 956519 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1396695 20998598 ~ 21000137 (+) False LOC110499980

Expression Profile