RNA id: TU1963826


Basic Information

Item Value
RNA id TU1963826
length 1100
RNA type TUCP
GC content 0.42
exon number 3
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACATAAAAGTTACCATACATTAGTTATCAGATAAAACAGTTGCTGTTTGATGTTGTaaaaggggcagcaggtagctagcggttagagtgttgggccagtaactgaaaggtcactagTTCAAATATCTGggtcgacaaggtgaaaaatgttTTGATGTACCTTTGAACAAGGCACTGGCAAACCCTGGTCTCGAACCTACTCTCCAAGGATGACTCAAGGGGAGTTGGAATatccaaaaacacaaaaaaaacacatttccaattcacaaaTGGGCATAAAACAAACGTGTACATGTGGGAAATAGGACAAATTTAAGCACCCACCTAATTATTATAAAAGAAAGCTCAACCAAGCCAAAATATATACTGATGGGATACTACTTGGAACCTGAAATAGATTTGAAACCATAATTTGCATAATGCATCTGTCCTGCTGCTCTAAGAGCATTTATATCCCTGTTGAACACTTCATGACTGAGATCTGTTCTTGATGACAacagaacccacaacaaccatgactTTTATCACCATCTTCATCTGGACACTTGTCTTCTACATACAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCGGTAGTGAAAGTTGTTCTCCCAGAACAGACAGTCTCTCTGAACTGTAAAACCAGCAGAAATGTGTATTCTAATAACTACCTAGCGTGGTACCAACAGAAACCTGGAGGAGCTCCTAAACTCCTTATTTACCTTGCTACAACACTTCAGTCTGGGACTCCATCTAGATTCAGTGGCAGTGGATATGGGagtgacttcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagAGTTACCACTACATCAATAGTAAACATGCGTTCACACAGTGATACAGAGTCGTACTAaaacctccctcagtcagactgcacagtgaCTGTACTGATACAGATCGGACCTACTGCAGGTGCTGAGGGGGAAGAGACATTGACATGGAACACTGACTGAACTAAATTACACTGAGCTAAATATATCAGTGATGATGTCTATAATGTAAACTTATCCCAGGTGCTGAGGGGAAGACAATGACATGGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963966 lncRNA upstream 8563 19475896 ~ 19478051 (+) True G1714151
TU1963949 lncRNA upstream 47010 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 52850 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA upstream 81055 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 125725 19360186 ~ 19360889 (+) True G1714126
TU1963861 lncRNA downstream 21789 19549920 ~ 19660313 (+) False G1714090
TU1963878 lncRNA downstream 21789 19549920 ~ 19606760 (+) False G1714090
TU1963880 lncRNA downstream 21789 19549920 ~ 19601903 (+) False G1714090
TU1963883 lncRNA downstream 48900 19577031 ~ 19643272 (+) False G1714090
TU1963893 lncRNA downstream 48900 19577031 ~ 19616925 (+) False G1714090
XM_036958467.1 mRNA upstream 55115 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 98542 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 148963 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 180531 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 181083 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 213993 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 213994 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 227778 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 227778 19755909 ~ 19761293 (+) False LOC110499934
TU1963881 other upstream 13858 19460677 ~ 19472756 (+) False G1714090
TU1963819 other upstream 13858 19464882 ~ 19472756 (+) False G1714090
TU1963841 other upstream 39763 19384972 ~ 19446851 (+) False G1714090
TU1963844 other upstream 39763 19430723 ~ 19446851 (+) False G1714090
TU1962997 other upstream 749178 18734791 ~ 18737436 (+) True G1713384
TU1963834 other downstream 51991 19580122 ~ 19587820 (+) False G1714090
TU1963853 other downstream 74330 19602461 ~ 19623914 (+) False G1714090
TU1963818 other downstream 89263 19617394 ~ 19623914 (+) False G1714090
TU1964921 other downstream 581067 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 1030291 20558422 ~ 20558751 (+) True G1715392

Expression Profile