RNA id: TU1963821


Basic Information

Item Value
RNA id TU1963821
length 948
RNA type TUCP
GC content 0.40
exon number 2
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGGCATAAAAATGTGTGAAATAAGACAAATTTAATTACCCACCTAATTATTATAAAATAAATCTCTAAATGTATTCTGATGGGATACTACTTGAAACCTGAAATAGAATTGAAACATTATTTGCATAATTAATTTGCTCCGCTGCTCTAAGAGGATTTATAGCCCTGTGAGTTTAACACTTCATGACTGAGAGCTGTTCTTCATGACAACAGAACCATGACTTTTATCACCATCTTCATGTGGACACTTGTTTTCTACATACAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCGGTAGTGAAAGCTGTTCTCCCAGAACAGACAGTCTCTCTGAACTGTAAAACCAGCAGTGATGTTAACAACAATGACTTTTTAGCGTGGTACCAACAGAAACCTGGAGGAGCTCCTCAACTCCTTATTTACCGTGCTACAACACTTCAGTCTGGGACTCCATCTAGATTCAGTGGCAGTGGATCTAGGagtgacttcactctgaccatcagtggagtcAAGGTtgaagatgcaggagattactactgtcagAGTTACCACAGTGGTGGAGTGTTCACACAGTGATACAGAGTCGTACAAaaacctccctcagtcagactgtaCAGTGACTGTACTGATACAGCTGGGACCTACTGCAGGTGCTGAGGGGAGGAGATGATCCAGTACAATGACACAGTGTGTAGTAGAGCTGAACAACAATAGAGTCAAACTAGAGCTATGTCTAGAAGACCTTACATCATAACTGATCACTAAATGTTTCTCCTGAACATTAACTACATGTTGACTCTGTTAAGTAACCATCAACCAATCTGAATGGAGATATTGTGCAATTATCAAAACCCCTAAAGATGACTTATGTTTTGAAAAGCTAGAATTCAATCAACATGATTCAAACAGATACAATAAAGCCACTAAACATTACCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963966 lncRNA upstream 20077 19475896 ~ 19478051 (+) True G1714151
TU1963949 lncRNA upstream 58524 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 64364 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA upstream 92569 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 137239 19360186 ~ 19360889 (+) True G1714126
TU1963846 lncRNA downstream 10863 19510086 ~ 19638888 (+) False G1714090
TU1963861 lncRNA downstream 50697 19549920 ~ 19660313 (+) False G1714090
TU1963878 lncRNA downstream 50697 19549920 ~ 19606760 (+) False G1714090
TU1963880 lncRNA downstream 50697 19549920 ~ 19601903 (+) False G1714090
TU1963883 lncRNA downstream 77808 19577031 ~ 19643272 (+) False G1714090
XM_036958467.1 mRNA upstream 66629 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 110056 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 160477 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 192045 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 209991 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 242901 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 242902 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 256686 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 256686 19755909 ~ 19761293 (+) False LOC110499934
TU1963881 other upstream 25372 19460677 ~ 19472756 (+) False G1714090
TU1963819 other upstream 25372 19464882 ~ 19472756 (+) False G1714090
TU1963841 other upstream 51277 19384972 ~ 19446851 (+) False G1714090
TU1963844 other upstream 51277 19430723 ~ 19446851 (+) False G1714090
TU1962997 other upstream 760692 18734791 ~ 18737436 (+) True G1713384
TU1963834 other downstream 80899 19580122 ~ 19587820 (+) False G1714090
TU1963853 other downstream 103238 19602461 ~ 19623914 (+) False G1714090
TU1963818 other downstream 118171 19617394 ~ 19623914 (+) False G1714090
TU1964921 other downstream 609975 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 1059199 20558422 ~ 20558751 (+) True G1715392

Expression Profile