RNA id: TU1963883


Basic Information

Item Value
RNA id TU1963883
length 915
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTCTAAGATAAGTCTTTATTTTCATCTATTCATCAAAGCATCAAAGCAAACATTCCTACAGATTCTAATAGTTATATAACAGAACACATCACATCTAACACTGATACAACATCAGTCTACAGAGACGATTGACACATGAACTCAAGCAAAGCCCCCTGTTAGTCTACATGTCAGTGATCAATAAGACAGAGAACATCTGATCTCAGAACAGAGTCAAAGCAGAGGAACCAGCAGCCTCCCTCCACAGGGGTGTGTGACTGAGGGGTCCTACCCAGAACAGTCAGCCCTCCTCAAGGtcttggtgactggagtctgggAATTCTGCTGAGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCAGGCCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGGCCATCCTTCTCCAGGACCGTAGAACTGGTCTCCTGCTTCTGGCTGGTCCCGTCCACTTTCCATCTTATGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACACGTCAGTGTGGCTGTTATTGTACTGGACAGTTCCTCTCTAGCGGGGGGCAGGACAGTGAGGGTGGGAGCACTGTTACCTGGAACAAACAGAACACATCAACTGCATCAACTATGTCCAAAAGATTTATAAAAGCAATAGATATACAAATATATTGATTTTGAAATGCCTTCTAAATATAGTGTAGTTAGATTGATAAAAGATTTGAAGAAAACACAAACCATAATATGATAGATATACAATGCAGATTTATGAACAATATGAGTCAAGTGTTAACTTTAGCATTACTAGTATGTCAGATATCTTAGAATTGTTTCTGATCAGAatactctttttttatttttataagagATTTGAAGAAAACACAAAATGATAGATATACAATGCAGATTTATGAACAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963970 lncRNA upstream 43765 19487800 ~ 19533266 (+) True G1714154
TU1963899 lncRNA upstream 64727 19484067 ~ 19512304 (+) False G1714090
TU1963966 lncRNA upstream 98980 19475896 ~ 19478051 (+) True G1714151
TU1963949 lncRNA upstream 137427 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 143267 19386449 ~ 19433764 (+) True G1714133
TU1963820 lncRNA downstream 14597 19657869 ~ 19706090 (+) False G1714090
TU1963831 lncRNA downstream 14597 19657869 ~ 19754609 (+) False G1714090
TU1963849 lncRNA downstream 14597 19657869 ~ 19722494 (+) False G1714090
TU1964015 lncRNA downstream 34665 19677937 ~ 19683034 (+) False G1714196
TU1964016 lncRNA downstream 34665 19677937 ~ 19683034 (+) True G1714196
XM_036958467.1 mRNA upstream 145532 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 188959 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 239380 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 270948 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 65942 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 98852 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 98853 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 112637 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 112637 19755909 ~ 19761293 (+) False LOC110499934
TU1963826 other upstream 48900 19486614 ~ 19528131 (+) False G1714090
TU1963821 other upstream 77808 19498128 ~ 19499223 (+) False G1714090
TU1963881 other upstream 104275 19460677 ~ 19472756 (+) False G1714090
TU1963819 other upstream 104275 19464882 ~ 19472756 (+) False G1714090
TU1963841 other upstream 130180 19384972 ~ 19446851 (+) False G1714090
TU1964921 other downstream 465926 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 915150 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1355326 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2532691 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 3075647 22718919 ~ 22721074 (+) False G1717516

Expression Profile