RNA id: TU1963866


Basic Information

Item Value
RNA id TU1963866
length 2444
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTCTAAGATAAGTCTTTATTTTCATCTATTCATCAAAGCATCAAAGCAAACATTCCTACAGATTCTAATAGTTATATAACAGAACACATCACATCTAACACTGATACAACATCAGTCTACAGAGAGGATTGACACATGAACTCAAGCAAAGCCCCCTGTTAGTCTACATGTCAGTGATCAATAAGACAGAGAACATCTGATCTCAGAACAGAGTCAAAGCAGAGGAACCAGCAGCCTCTATCCACAGGGGTGTGTGACTAGGGGGCCTACCCAGAACAGTCAGCCCTCCTCAAGGtcttggtgactggagtctgggAATTCTGCTGAGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCAGGCCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGGCCATCCTTCTCCAGGACCCTAGAACTGGTCCCCTGCTTCTGGCTGGTCCCGTCCACTTTCCATCTTATGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACACGTCAGTGTGGCTGTTGTTGTACTGGACAGCTCCTCACTAGAGGGGGGCAGGACGGTGAGGGTGGGGGCACTGTTACCTGGAACAAACAGAATACATCAACTAAGTAATTACAACAAGTACAGCAACACTAAGAGATTATCTCCATTAAGGTCCACAACCAAATAAAGTGAATTGGAAATGCCATCTAAATATGAATGTAGAAGTTGGactgttgaaaagatttggaaaaAACACTAAAGTAATAGGATACAAAGCAGATTTATGAACCAAACAAGTATAAAGTGGTTAAATAACTAGAGTTACTAGTCATATGGTGTCAGTTATACATGTTATACAGATATTGTTTAGGAATGGATCTGATCAGAACAGCCAAGTCATATTAATAGTATTTACATCACATATCAAACATGTTGGATTATGAAGTCAGTTACAACCATAACTGAGATCCTTTGTCTTCacactaacagtgaagtctaccATGAACAGAATGCAACAATGATGAATACCATATAAAATACCATTAGTTATTATACCAGCATTAGGAGTTATATTCTGCAATTATACAAATAAGACGTATTTAAACCTACAATTTATCATtttgattaaataaatatttatttgaatGAAGGCTCATTCAAAATCTAAATTTAACCAAAAATATTTGAGTTAAAgataataaaaatataaataaaaaatggcacacaaacagtaatacacaatgcaacAACTATATTCCATATTATTAAATATTTATCATACTGGAACTCTCCTCTGCAATCCATCAAACCACACATTTAAATAAACACCTACATTTGAACATGTTAtttaaataacatttcatttgaaagaaGGCTTAGTCAAAAgtaatacaaaaaatatatttttttaggaaGGAAAATATGAAAAATCACAATATATTCATATAGACGAAGTTTCACAGAGtaaaatacccccaaaaataATCAGAAAGAAATATCAAAGAGCGTGTTACTTACTTCCAACATCTAGTCTGGTGCCGCTACCAAAAGTGTACCACAGTGATACAATCCCTATTACTGCTGGTACAACAACCTCCTGCATGTTTGGCACTCTTCATTTCATTAGACTGTGGTTCAAATAATTAACTCTACTATAGTATGAATACATTTCAGAAATGAATTATTCTACTCAATTAGAAATAAAGTGTTTTTCATGTTGATTTCCTTAACATGGACCAAACCTGACTTTTTCTTGTACATCTCCTACTACTGTAGGTGCAGCATGTTTATTCATACAACTAATCTAAAATGTAGGCGAATCACTTCATAGTTTAAAGGCAGGTCATATTTGATTAGATGTAATAACATTCATATTAAAAGTGGCCATAGTATGTGTAGGGCTTGTGTATTTTGTTTAAATCATCTAAAAAAGTTCATTTGAAAAATCCTCAATATCAAGTCAAAATGTATAGAGAAATTGAAACACAACATCAAAAGTTGAATAAATAGTTTGGAataaataatttgttctttactTACTTCCAACatcatgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctcccccgctttcccccagctgttccttgtctcctcttgactacctcgtcaccccttctcccacctgttccccttttccctctgattaggtccctatatctctctctgtttctgctcctgtctttgtcggattcttgtttgttgtgtttcatgcctgagccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctacctatgtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcactcaccgtaacagaagaatccgaccaagaatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963898 lncRNA upstream 2267 19484067 ~ 19601903 (+) False G1714090
TU1963880 lncRNA upstream 2267 19549920 ~ 19601903 (+) False G1714090
TU1963990 lncRNA upstream 10739 19591491 ~ 19593431 (+) True G1714172
TU1963970 lncRNA upstream 70904 19487800 ~ 19533266 (+) True G1714154
TU1963899 lncRNA upstream 91866 19484067 ~ 19512304 (+) False G1714090
TU1964015 lncRNA downstream 17624 19677937 ~ 19683034 (+) False G1714196
TU1964016 lncRNA downstream 17624 19677937 ~ 19683034 (+) True G1714196
TU1963929 lncRNA downstream 28283 19688596 ~ 19689332 (+) True G1714115
TU1964031 lncRNA downstream 52392 19712705 ~ 19735869 (+) True G1714210
TU1963862 lncRNA downstream 59737 19720050 ~ 19733117 (+) True G1714090
XM_036958467.1 mRNA upstream 172671 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 216098 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 266519 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 298087 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 48901 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 81811 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 81812 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 95596 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 95596 19755909 ~ 19761293 (+) False LOC110499934
TU1963871 other upstream 16350 19430821 ~ 19587820 (+) False G1714090
TU1963834 other upstream 16350 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 76039 19486614 ~ 19528131 (+) False G1714090
TU1963821 other upstream 104947 19498128 ~ 19499223 (+) False G1714090
TU1963881 other upstream 131414 19460677 ~ 19472756 (+) False G1714090
TU1964921 other downstream 448885 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 898109 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1338285 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2515650 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 3058606 22718919 ~ 22721074 (+) False G1717516

Expression Profile