RNA id: TU1963849


Basic Information

Item Value
RNA id TU1963849
length 1795
lncRNA type read_through
GC content 0.39
exon number 3
gene id G1714090
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19384972 ~ 19754609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTCTAAGATAAGTCTTTATTTTCATCTATTCATCAAAGCATCAAAGCAAACATTCCTACAGTATCTAATAGTTATATAACAGAACACATCACATCTAACACTGATACAACATCAGTCTACAGAGACGATTGACACATGAACTCAAGCAAAGCCCCCTGTTAGTCTACATGTCAGTGATCAATAACACAGAGAACATCTGATCTCAGAACAGAGTCAAAGCAGAGGAACCAGCAGCCTCCCTCCACAGGGTTGTGTCACTGAGGGGTTCTACCCAGAACAGTCAGCCCTCCTCAAGGtcttggtgactggagtctgggATTTCTGCTGGGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCTGGCCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGGCCATCCTTCTCCAGGACCCTAGAACTGGTCTCCTGCTTCTGGCTGGTCCCGTCCACTTTCCATCTTATGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACACGTCAGTGTGGCTGTTGTTGTACTGGACAGCTCCTCACTAGAGGGGGGCAGGACGGCGAGGGTGGGAGCACTGTTACCTGGAACAAACAGAATACATCAACTAAGTAATTACAACAAGTACAGCAACACTAAGAGATTATCTCCATCAAGGTCCACAACCAAATAAAGTGAATTGGAAATGCCCTCTAAATATGAATGTAGAAGTTGGATTATTTAAAAGATGTGGAGAAAACACTAAAGTAATAGGATACAAAGCAGATTTATGAACCAAACAAGTATAAAGTGGTTAAATAACTATAGAGTTACTAGTCATATGGTGTCAGTTATACATGTTATACAGATATTGTTTAGGAATGGATCTGATCAGACCAGCCGACTCATATTCATAGTATTTACATCACATATCAAACATGTTGGATTATGAAGTTAGTTACAACCATAACTGAGGCCCTTTGTCTACCATGAACACAATGCAACAGTGATGCCTACTTTATCCTATACTATATATTAGTTATAATACCAGAATTAGGAGTTCTAGTCCACAATCTTACAAATCAGAAAGACAAATAAACCTACAATTTAGCATGTCGATGATATAGAATATTATTTGAAAGAAAGGCTCAGTCAAAAGTAATTtgaaaagcatctaaaatatCTCAAATGTAAATATGTCAATAGAGACAGAGTTTAGGAAAGTAAATATCCCAAAATGTAGTCTGAAAGACATATCAAAAGAGCTTGTTACTTACGTCCAACATCAAGTCTGGTCAAGTCACTATTACTGCTGGTACAAAAACCTCTCTGTGTTGTGATGCTGCAGCTGTTACAGTGAAGATCACGTATACAGAATCATAATCAACACAGAAACACTTTAACATCTTCCAGGTAGAACAAACACTTCATATTAGCTGTTTCTAGATAATACAAATATGAATTGTATCTTAAATCCAGATATGAGTCATTTTTCCTTCCTCTGTGTATCAGGTGTTCTTCTAGTCTGGAGGTACAGTCCAGCATTAGATCAGTGTTGCTAGTATTCCTCCATATTGTCCATATGaaagacaacagcagcagcagtagtgataGTGATCCATGTTGTATAttcctttattaaacatgttgatctCAGATTTAACAGTGGTGGTAAAGTCACAGAGGACAGATAACACAACTAGAGGAATCCTACCAGCTTTAGTTTAGAGAAGTGTTCACTAACTGATTAGAGGAACTTACATGAGAGACCGAGCATGAGTGAACAGACAGTTCATTACATCTGATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963883 lncRNA upstream 14597 19577031 ~ 19643272 (+) False G1714090
TU1963846 lncRNA upstream 18981 19510086 ~ 19638888 (+) False G1714090
TU1963893 lncRNA upstream 40944 19577031 ~ 19616925 (+) False G1714090
TU1963878 lncRNA upstream 51109 19549920 ~ 19606760 (+) False G1714090
TU1963898 lncRNA upstream 55966 19484067 ~ 19601903 (+) False G1714090
TU1964541 lncRNA downstream 38003 19760497 ~ 19760902 (+) True LOC110499934
TU1964555 lncRNA downstream 61888 19784382 ~ 19784728 (+) True G1714612
TU1964556 lncRNA downstream 64185 19786679 ~ 19787340 (+) True G1714613
TU1964562 lncRNA downstream 70394 19792888 ~ 19793165 (+) True G1714619
TU1964563 lncRNA downstream 70763 19793257 ~ 19793527 (+) True G1714620
XM_036958467.1 mRNA upstream 226370 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 269797 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 320218 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 351786 19302368 ~ 19306083 (+) False bik
XM_021576977.2 mRNA downstream 19630 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 19631 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 33415 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 33415 19755909 ~ 19761293 (+) False LOC110499934
XR_005038551.1 mRNA downstream 33415 19755909 ~ 19761293 (+) False LOC110499934
TU1963853 other upstream 33955 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 33955 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 70049 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 129738 19486614 ~ 19528131 (+) False G1714090
TU1964921 other downstream 386704 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 835928 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1276104 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2453469 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2996425 22718919 ~ 22721074 (+) False G1717516

Expression Profile