RNA id: TU1963966


Basic Information

Item Value
RNA id TU1963966
length 502
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1714151
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19475896 ~ 19478051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGTCACTttagtccgggtgaccaggttctTGCTCTGCTGCCAATTGTTGGTTCTCCTTTTCAAGCCAAGTTTCAAGGTCCATATACAGTGTTGCGCCAGTACACTGAGCAAAATTATCTAGTGGCCACTCCAGAACGGAGGAAAGCACACCAGCTGTGCCATGTAAATCTGTTAAAACCCTATTATGCACGTTCCTCTGAGACTGAACAGTGGGATTCTGCAGAGGACGCTAAACCTGTTCTTTTGGCTGATACCGTTGTTTCCTTGGGTTCTTGTCGTGCTAGATCTGTGTATGAGGAGAAAGATGTTCCTGGTCCTGACGATTGTATATTGCAGGGTAGATTGAAAAATTCAGAAACACTGGATATCTTAGACAGTCTTCTCACTCACCTACCTATTGATGGGCGGAAAGAGATGGTTGGTCTGATTCAGAGATTTCCAGgatgccggtgggcggagttgagagggtcgtcagctacatgggcccaggtgtttcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963949 lncRNA upstream 36292 19405656 ~ 19439604 (+) True G1714134
TU1963948 lncRNA upstream 42132 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA upstream 70337 19400037 ~ 19405559 (+) True G1714097
TU1963940 lncRNA upstream 115007 19360186 ~ 19360889 (+) True G1714126
TU1963802 lncRNA upstream 121004 19353880 ~ 19354892 (+) True G1714082
TU1963898 lncRNA downstream 6016 19484067 ~ 19601903 (+) False G1714090
TU1963899 lncRNA downstream 6016 19484067 ~ 19512304 (+) False G1714090
TU1963970 lncRNA downstream 9749 19487800 ~ 19533266 (+) True G1714154
TU1963846 lncRNA downstream 32035 19510086 ~ 19638888 (+) False G1714090
TU1963861 lncRNA downstream 71869 19549920 ~ 19660313 (+) False G1714090
XM_036958467.1 mRNA upstream 44397 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 87824 19384992 ~ 19388072 (+) True LOC118942905
XR_002470041.2 mRNA upstream 138245 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 169813 19302368 ~ 19306083 (+) False bik
XR_005038547.1 mRNA downstream 231163 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 264073 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 264074 19742125 ~ 19752304 (+) True LOC110499917
XR_002470045.2 mRNA downstream 277858 19755909 ~ 19761293 (+) False LOC110499934
XR_005038550.1 mRNA downstream 277858 19755909 ~ 19761293 (+) False LOC110499934
TU1963881 other upstream 3140 19460677 ~ 19472756 (+) False G1714090
TU1963819 other upstream 3140 19464882 ~ 19472756 (+) False G1714090
TU1963841 other upstream 29045 19384972 ~ 19446851 (+) False G1714090
TU1963844 other upstream 29045 19430723 ~ 19446851 (+) False G1714090
TU1962997 other upstream 738460 18734791 ~ 18737436 (+) True G1713384
TU1963826 other downstream 8563 19486614 ~ 19528131 (+) False G1714090
TU1963821 other downstream 20077 19498128 ~ 19499223 (+) False G1714090
TU1963834 other downstream 102071 19580122 ~ 19587820 (+) False G1714090
TU1963853 other downstream 124410 19602461 ~ 19623914 (+) False G1714090
TU1963818 other downstream 139343 19617394 ~ 19623914 (+) False G1714090

Expression Profile