RNA id: TCONS_00004846


Basic Information

Item Value
RNA id TCONS_00004846
length 953
lncRNA type lincRNA
GC content 0.39
exon number 2
gene id XLOC_002602
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8618718 ~ 8621543 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCGACTGACCGCGGCGAGGGCTCGAAACAGGTGTGGCGGTCTTCAGGGGTCTTTTACGGCACCCCACCCGCGCTTCATTGACCCACACTAAAAAGACTTTCCAACTCATTGACACCAAGTTGCTGAGCACCAGGGACGGGACAATGAACGAGTTCACACCTTCCGGCAGTCACAAGAACACCCTCCTTCAGCCTGCCAGCGTATTGAAGGTGTggatgtttgttttaaataagtttCATCTAAAGTTTCTAGCCAGAATCTTACTTGCATGGAAATGCAATTAGAACAGGCTTGGGATGGTTTGAAAATCGCAGGATCAGGAGTGTGGACAACATCCGTATGGTCTTCCTGGAAACTGTGAGGAAGCTCATTATATTGCCAAACATCCCAGGTTACTCTGAGCCTCTTCCTGTTTCTGTTGTCCTGCCATGACCCAGAACACACCAGAAGACACTTATCGATTACTTTCTGTCCTCTGTCAAACATACAGATTCTCTGAGGAGTTCAAAAATGTTCAAGCTGCTGTTAGACGTTGCTTTAAGAACATCCAGGGTAAACTTTGACTCAAATTTAGGTAaattatggacaaacccaaacctTGTGctaaatttgtaattaaattgttTGGATTTGtcaatattttactagaatttGGGCTGAAATAATTCTGCTTTTTTAGTGTAGAAAgcaatgttattattgttaagcatttttaaatgagtttttatttcaatactagTTTGACGTTTCAGTTTAGCTTTGGTTTGTTTCAGTATTGCTTTACTTTTTCCattaatgattttcttttttgttttttatacttgGTTTCGCTTTTAGTTTTTGTAATTATAGTTTAGCCGTTAACTTAATATGTCTAGTGTCCACCAAATATTTCCATCTTACATTTAACGCTTGTGCAAGcatcttaataaaaataaaagtgaaatggcT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000142121

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004840 lncRNA downstream 349016 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00004828 lncRNA downstream 572086 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00005749 lncRNA downstream 635105 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004822 lncRNA downstream 638854 7976969 ~ 7979995 (-) False XLOC_002589
TCONS_00004821 lncRNA downstream 639125 7976348 ~ 7979724 (-) False XLOC_002589
TCONS_00005998 lncRNA upstream 17648 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00005999 lncRNA upstream 220425 8841698 ~ 8858549 (-) False XLOC_002606
TCONS_00006000 lncRNA upstream 220425 8841698 ~ 8858568 (-) True XLOC_002606
TCONS_00006001 lncRNA upstream 524235 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00006002 lncRNA upstream 568824 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00004845 mRNA downstream 184033 8416117 ~ 8434816 (-) True XLOC_002601
TCONS_00004844 mRNA downstream 260453 8298984 ~ 8358396 (-) True XLOC_002600
TCONS_00004843 mRNA downstream 323507 8274075 ~ 8295342 (-) True XLOC_002599
TCONS_00004842 mRNA downstream 323884 8266371 ~ 8294965 (-) False XLOC_002599
TCONS_00004841 mRNA downstream 336034 8266371 ~ 8282815 (-) False XLOC_002599
TCONS_00004847 mRNA upstream 39381 8660654 ~ 8672820 (-) True XLOC_002604
TCONS_00004849 mRNA upstream 325955 8947228 ~ 8956742 (-) False XLOC_002607
TCONS_00004850 mRNA upstream 325955 8947228 ~ 8957480 (-) False XLOC_002607
TCONS_00004851 mRNA upstream 325957 8947230 ~ 8956779 (-) False XLOC_002607
TCONS_00004852 mRNA upstream 326075 8947348 ~ 8955413 (-) False XLOC_002607
TCONS_00004819 other downstream 659011 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 726165 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 726983 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 1106726 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 1266739 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004848 other upstream 54617 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 395448 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 416085 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 520292 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 913509 9534782 ~ 9538326 (-) False XLOC_002618

Expression Profile

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