RNA id: TU1964613


Basic Information

Item Value
RNA id TU1964613
length 1486
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G1714654
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19849367 ~ 19851600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttttgttctctcttcCGTTCTTCCTATAAGGTGATTCCGGTGATGTGAAGATTGACAGCTGTGGTTGTTGCAGTCTAAAGTTTAAGGGTCTGACGTGTATTTCAGTGAAAAGGGCTGTACATGTTTTCTAACTCAGATGAATAACATGGGACTACATGGAGGACAAAAACATTTGGGGCGAAAGTTAGGAGATAGGCGTCTACCTACCTATCATGGCTAAGGACTAAATGACTTACTATTCaaataagagaaagagagagaggaaagagagagggaaaggaaaggagggaCAGAGGGTGGTCTGATACCAATACGTACTACTCAACACAGCACAAAGGACCACAACAAGACACTACAAGGAGGGACTGCGACCAATCAACTCTGAGGTAGAGAAGGCACCAACAAGGAGTCATACAGGACATGAggccgggggaggggggggcaaacTACAGGGCACGTAATGCGTACATTCTCATCCACCAAACATGCTAACACTCTCAACACTGATTGGCTGCTGGAATGTCAAGTGGACAATTGGCGGCCAATCAAAAGTGAGAGCTGTTGAGCGTCCGATGGATGGACAAAACCAATCCACACAGCCTTGCGTTCTGCGGTCCCTCTTGGTGTGCGTTTAAGAGTACTGACCTGCTCGCAAACATTTAATGTGGGCTAGCAAAACAGAAAATACAGCATGAAAACAGCAGCGGTTCCAAGAGTCATTTCAACATGATGATGAACAAATAAAGAACAGTGTGTAAAATCATAGTGCACAATGGCTGACGGGGAAGAAGAACAAAGTTTGGGACATTTTGGGGCCGAGGATGTGGTGGGGGTGTGGCAAGGTTAGGGTATCAGAAGGTTGAGGCGAGTGAAGCGATAGGTGCATTGGGTGGAAGGGCCAATAGAAAATGTGTAATGTGTTGGTTTGTGGATGCAGAGAAAATAAGTGGGCGGGTCAGGATAGGTCATTTTGCAGACGGGACGTCGCCCTTTACAAACGTTCGTCCAGCCTTCAAAAATAGCCCACCTTATACCTTAAATAACTAATCTAACATCAGTCATGACATGAAGGAGGCGGGAAAATAGTTAACTCAAGACTGCTGGGACACAGCCCTGAAGGAAGTAATGGGTGGGAGTCAGTGAAAAGGGTGAAAGGTTATAGATGGGGCTGGTGAAGGCCTGAACCTTGGGAGAGCTAGAGGACAGAAGACGTACCTTCATTGGgatgttggtgatggtggtggaggcAAGGTCAAAGTGCTGCTGCACTAGAATGTTGAGTTTGGTGGCCAGGTGCCTCCCTGCCCGCACACTGTGAACCTCGCTGGTCAGCAGAGAGGAGACCTCTTTCTTTGGCCGGTCTGAGACCAGTGTGTCCTCTCCTTGAGGGAAGATGTGGACGAGCACCAGCTCACACTGCTGGATAGACATCAGTCTGTCTGAGCCTGCTGCCATCTTGTTTTGCTCTAGAATGGTCTCTTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964563 lncRNA upstream 56087 19793257 ~ 19793527 (+) True G1714620
TU1964562 lncRNA upstream 56449 19792888 ~ 19793165 (+) True G1714619
TU1964556 lncRNA upstream 62274 19786679 ~ 19787340 (+) True G1714613
TU1964555 lncRNA upstream 64886 19784382 ~ 19784728 (+) True G1714612
TU1964541 lncRNA upstream 88712 19760497 ~ 19760902 (+) True LOC110499934
TU1964635 lncRNA downstream 35464 19887064 ~ 19887326 (+) True G1714674
TU1964636 lncRNA downstream 37722 19889322 ~ 19889531 (+) True G1714675
TU1964627 lncRNA downstream 51454 19903054 ~ 19903389 (+) True G1714666
TU1964640 lncRNA downstream 61247 19912847 ~ 19913157 (+) True G1714679
TU1964788 lncRNA downstream 121862 19973462 ~ 19973841 (+) False LOC110499947
XM_021576987.2 mRNA upstream 31036 19810551 ~ 19818578 (+) False LOC110499937
XM_021576989.2 mRNA upstream 31036 19810559 ~ 19818578 (+) False LOC110499937
XM_021576988.2 mRNA upstream 31036 19810730 ~ 19818578 (+) True LOC110499937
XM_021576984.2 mRNA upstream 42742 19797729 ~ 19806872 (+) False LOC110499935
XM_021576996.2 mRNA downstream 9554 19861154 ~ 19885723 (+) False LOC110499940
XM_021576997.2 mRNA downstream 19015 19870615 ~ 19885723 (+) True LOC110499940
XM_036957201.1 mRNA downstream 40877 19892477 ~ 19900807 (+) False LOC110499945
XM_021577003.2 mRNA downstream 40945 19892545 ~ 19900807 (+) True LOC110499945
XM_021577009.2 mRNA downstream 51985 19903585 ~ 19907504 (+) True LOC110499950
TU1963853 other upstream 225700 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 225700 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 261794 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 321483 19486614 ~ 19528131 (+) False G1714090
TU1964921 other downstream 257598 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 706822 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1146998 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2324363 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2867319 22718919 ~ 22721074 (+) False G1717516

Expression Profile