RNA id: TU1964672


Basic Information

Item Value
RNA id TU1964672
length 959
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1714707
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19901010 ~ 19901968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagcttcacctggaatgcttttcaacaatcttgaaggagttcccacatatgctgagcacttgttggctgcttttccttcactctgcagtccaactcatcccaaaccatttcaactggatcgaggtcaggtgattgtggaggccaggtcatctgatgcagcacttcatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttgagccATTGTTGTGTTGaataacaaatgatagtcccactaagcgcaaaccagatgggatggtgtatcattgCAGAATgttttggtagccatgctggttaagtgtgccttaaattctgaataaatcacaatgacaccagcaaagcacccccacaccaccacctccatgcttcacggaaggaactacacatgcagcgatcatccgttcacctactctgcgtctcacaaagacaaggcggttcgaaccaaaaatctcaaatttggaccaaaggacagatttcctaccgggctaatgtccattgctcgtgtttcttggcccaagcaagtctcttgttcttattagtgtcctttagtagtggtttctttgcagcaattcaaccatgaaggcctgattcacgcaatctcctctgaacagttgatgttgagatgtttgttacttgaactctgtgaagcatttatttgggctgcaatttcagaggcgcagttaactctaatgaacttatcctctgcagcagaggtaactcagggtcttactttcctgtggcggtcctcatgagagccagtttcatcatagcgcttgaagaatcttttaaagttcttgaaaatcTCCAcattactgaccttcatgtcttaaaggaatgatggactatcatttctcattgcttatttgagctgttcttgccatatggACTTGTACcatatagggctatcttctgtataccacccctaccttgtcacaacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964725 lncRNA downstream 12813 19887900 ~ 19888197 (-) True G1714752
TU1964670 lncRNA downstream 56174 19843806 ~ 19844836 (-) True LOC110501023
TU1964695 lncRNA downstream 78473 19822222 ~ 19822537 (-) True LOC110499938
TU1964586 lncRNA downstream 105668 19795078 ~ 19795342 (-) True G1714638
TU1964574 lncRNA downstream 107481 19793235 ~ 19793529 (-) True G1714631
TU1964732 lncRNA upstream 438 19902406 ~ 19902628 (-) True G1714759
TU1964696 lncRNA upstream 12450 19914418 ~ 19946439 (-) True G1714726
TU1964753 lncRNA upstream 34853 19936821 ~ 19937164 (-) True G1714780
TU1965087 lncRNA upstream 71492 19973460 ~ 19973692 (-) True G1715068
TU1965102 lncRNA upstream 90329 19992297 ~ 19992887 (-) True G1715082
XM_036957198.1 mRNA downstream 42034 19843891 ~ 19858976 (-) False LOC110501023
XM_036957197.1 mRNA downstream 42152 19843891 ~ 19858858 (-) False LOC110501023
XM_036957199.1 mRNA downstream 42152 19843891 ~ 19858858 (-) False LOC110501023
XM_036957195.1 mRNA downstream 42153 19843891 ~ 19858857 (-) False LOC110501023
XM_036957196.1 mRNA downstream 42154 19843891 ~ 19858856 (-) False LOC110501023
XR_002470047.2 mRNA upstream 55273 19957241 ~ 19962354 (-) True LOC110499951
XM_021577001.2 mRNA upstream 104532 20006500 ~ 20013479 (-) True LOC110499944
XM_021576999.2 mRNA upstream 117223 20019191 ~ 20025740 (-) False LOC110499943
XM_021577000.2 mRNA upstream 117223 20019191 ~ 20025740 (-) False LOC110499943
XM_036957204.1 mRNA upstream 119935 20021903 ~ 20025740 (-) True LOC110499943
TU1964375 other downstream 283056 19604171 ~ 19617954 (-) True G1714470
TU1964373 other downstream 294330 19604171 ~ 19606680 (-) False G1714470
TU1964391 other downstream 447332 19451200 ~ 19453678 (-) True G1714475
TU1963419 other downstream 1135206 18765460 ~ 18765804 (-) True G1713755
TU1963377 other downstream 1231685 18668834 ~ 18669325 (-) True G1713719
TU1964728 other upstream 817 19902785 ~ 19903457 (-) True G1714755
TU1965105 other upstream 92703 19994671 ~ 19995602 (-) True G1715085
TU1965113 other upstream 109342 20011310 ~ 20013426 (-) False G1715091
TU1965116 other upstream 109342 20011310 ~ 20025695 (-) True G1715091
TU1965436 other upstream 642121 20544089 ~ 20545776 (-) True LOC118942908

Expression Profile