RNA id: TU1964795


Basic Information

Item Value
RNA id TU1964795
length 622
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1714813
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19999634 ~ 20000255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaatagcctccaataccctactcaataaattgttatgcagtctatcacagtgccatccattttgtcaccaaagccccatatactacccaccactgcgacctgtactctctcgttggctggccctcgcttcatactcgtcgccaaaccccctggctctaggtcatctacaagaccctgctaggtaaagtccccccttatctcagctcactggtcaccatagcagcacccacctgtatcacgtgctccagcaggtatatctctctggtcacccccaaaaccaattcttcctttggccgcctctccttccagttctctgctaccaatgactgcaacgtactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccagctgtcagaaaagctcacagattactgcacctgtacatagcccatctataatttagcccaaacaactatctctttccctactgtatttatttattttgctcctttgcaccccattttttctatctctactttgcacattcttccactgcaaatcaaccattccagtgttttacttgcaatattgtatttacttcgccaccatggcctttttttttgcctttacctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964807 lncRNA upstream 3082 19996349 ~ 19996552 (+) True G1714825
TU1964788 lncRNA upstream 25793 19973462 ~ 19973841 (+) False LOC110499947
TU1964640 lncRNA upstream 86477 19912847 ~ 19913157 (+) True G1714679
TU1964627 lncRNA upstream 96245 19903054 ~ 19903389 (+) True G1714666
TU1964636 lncRNA upstream 110103 19889322 ~ 19889531 (+) True G1714675
TU1964808 lncRNA downstream 669 20000924 ~ 20001199 (+) True G1714826
TU1964811 lncRNA downstream 2024 20002279 ~ 20002499 (+) True G1714829
TU1964784 lncRNA downstream 5261 20005516 ~ 20007836 (+) False LOC110499947
TU1964785 lncRNA downstream 7861 20008116 ~ 20008614 (+) True LOC110499947
TU1964873 lncRNA downstream 74732 20074987 ~ 20075187 (+) True G1714885
XM_021577004.2 mRNA upstream 42834 19952514 ~ 19956800 (+) False LOC110499946
XM_036957203.1 mRNA upstream 42834 19952545 ~ 19956800 (+) True LOC110499946
XM_021576998.2 mRNA upstream 47717 19939451 ~ 19951917 (+) True LOC110499941
XM_036957202.1 mRNA upstream 65033 19923790 ~ 19934601 (+) False LOC110499949
XR_005038552.1 mRNA downstream 54911 20055166 ~ 20092114 (+) True LOC110499953
NM_001160604.2 mRNA downstream 108870 20109125 ~ 20111713 (+) False nmes1
XM_036957205.1 mRNA downstream 125343 20125598 ~ 20176686 (+) False LOC110499954
XM_036957206.1 mRNA downstream 125344 20125599 ~ 20176686 (+) False LOC110499954
XM_036957207.1 mRNA downstream 125344 20125599 ~ 20176686 (+) False LOC110499954
TU1963853 other upstream 375720 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 375720 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 411814 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 471503 19486614 ~ 19528131 (+) False G1714090
TU1964921 other downstream 108943 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 558167 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 998343 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2175708 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2718664 22718919 ~ 22721074 (+) False G1717516

Expression Profile