RNA id: TU1965168



Basic Information


Item Value
RNA id TU1965168
length 208
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G1715138
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20055181 ~ 20055388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agagtagaggggagagagtagaggggagagagtagagcGGAGAGAGTACAGCAGAGGGGTACCTCGGTACATACCTACAAGGCTGTGCAGAGGCTGTGGAGTCGCAGTGGTGAGATTCATCTAGACGAgcaggaaggatggatggatcaGTGCTCCTCAACAGCTCTCAGCTGAAGACTTGACATCCTTTAACAGGAGAGGAGCtgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1965142 lncRNA downstream 3627 20051313 ~ 20051554 (-) True G1715114
TU1965126 lncRNA downstream 28033 20026915 ~ 20027148 (-) True G1715098
TU1965119 lncRNA downstream 48900 20004114 ~ 20006281 (-) False G1715092
TU1965120 lncRNA downstream 48987 20004114 ~ 20006194 (-) True G1715092
TU1965109 lncRNA downstream 52920 20001784 ~ 20002261 (-) True G1715089
TU1965169 lncRNA upstream 1553 20056941 ~ 20057226 (-) True G1715139
TU1965172 lncRNA upstream 6184 20061572 ~ 20061803 (-) True G1715142
TU1965173 lncRNA upstream 6587 20061975 ~ 20062694 (-) True G1715143
TU1965174 lncRNA upstream 7432 20062820 ~ 20063034 (-) True G1715144
TU1965175 lncRNA upstream 9147 20064535 ~ 20067009 (-) True G1715145
XM_021576999.2 mRNA downstream 29441 20019191 ~ 20025740 (-) False LOC110499943
XM_021577000.2 mRNA downstream 29441 20019191 ~ 20025740 (-) False LOC110499943
XM_036957204.1 mRNA downstream 29441 20021903 ~ 20025740 (-) True LOC110499943
XM_021577001.2 mRNA downstream 41702 20006500 ~ 20013479 (-) True LOC110499944
XR_002470047.2 mRNA downstream 92827 19957241 ~ 19962354 (-) True LOC110499951
XM_021577020.2 mRNA upstream 246052 20301440 ~ 20334668 (-) True LOC110499960
XM_021577022.2 mRNA upstream 279806 20335194 ~ 20360135 (-) False LOC110499961
XM_021577023.2 mRNA upstream 279806 20335194 ~ 20360136 (-) False LOC110499961
XM_021577029.2 mRNA upstream 361011 20416399 ~ 20419074 (-) False LOC110499964
XM_021577032.2 mRNA upstream 361011 20416399 ~ 20419074 (-) False LOC110499964
TU1965116 other downstream 29486 20011310 ~ 20025695 (-) True G1715091
TU1965113 other downstream 41755 20011310 ~ 20013426 (-) False G1715091
TU1965105 other downstream 59579 19994671 ~ 19995602 (-) True G1715085
TU1964728 other downstream 151724 19902785 ~ 19903457 (-) True G1714755
TU1964375 other downstream 437227 19604171 ~ 19617954 (-) True G1714470
TU1965436 other upstream 488701 20544089 ~ 20545776 (-) True LOC118942908
TU1966786 other upstream 1395729 21451117 ~ 21452422 (-) False LOC100301658
TU1966787 other upstream 1395729 21451117 ~ 21452450 (-) True LOC100301658
TU1966816 other upstream 1442269 21497657 ~ 21500226 (-) True LOC110499990
TU1966983 other upstream 1709151 21764539 ~ 21765210 (-) True G1716815

Expression Profile