RNA id: TCONS_00052925


Basic Information

Item Value
RNA id TCONS_00052925
length 747
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_026049
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6220081 ~ 6228146 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAAAatgtgGTCCAGTGGAGACTGAAAATGAACTGAGGATAGTCCTGTTGGGAAAAAGTGGAGTGGGTAAAAGTGCAACTGGAAATACCATCTTAGAAAGATATGTGTTTAAAGCAGAAACATCTCAAGAGTCTGTTACTCAAGAGAGTCAAAGCGAAACTCGAGAAATCAATGGTCGACACATTACTGTAATCGATACGCCAGGACTGTTTGATACTGAACTCACTAATGAAGAAATCCAGAAAGAAATCAGCAACTGCATCTCCATGATTCTGCCTGGACCACACGTGTTCATCATCGTGCTCAATTTAGGACAGAGATTCACTCAAGAAGAGGCTAAATCAGTGGAGATCATCCAAGAGACATTTGGGGAAAACTCTTTAATGTACACCATGGTGCTCTTCACCAGAGGAGATTATTTAAGAAACAAAACCATTGAACAGTGTTTGGCGAAACCTGGATCTCCTCTAATGAAGCTGATTGAAGCTTGTGGACACAGATTCCATGTGTTCAACAATAATGAGACTGAAGACCGAACACAAGTGGCTGATCTTCTAGAGAAGATAGACAACATGTTAAAAGCAAACGGAGGAAGTTTCTACTCTTGTAAGATGTTCAGAATGGCGACGATGATGGGTGTAGTGGATAAACTAAACAGAGAAAAAGAAGAACTGATAAAGAAACACGAGGAAGAGCTAGAAGAAATACAAAACCAGGCTGATGTTGAACTGTATCAGACTCTC

Function

GO:

id name namespace
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050942 lncRNA downstream 8316 6203736 ~ 6211960 (-) False XLOC_026048
TCONS_00052428 lncRNA downstream 15617 6203742 ~ 6204659 (-) True XLOC_026048
TCONS_00052427 lncRNA downstream 124455 6073491 ~ 6095821 (-) True XLOC_026046
TCONS_00052924 lncRNA downstream 169200 6046988 ~ 6051076 (-) True XLOC_026045
TCONS_00052426 lncRNA downstream 255966 5908214 ~ 5964310 (-) True XLOC_026043
TCONS_00052926 lncRNA upstream 15501 6237098 ~ 6240065 (-) True XLOC_026050
TCONS_00052927 lncRNA upstream 87096 6308693 ~ 6356411 (-) False XLOC_026052
TCONS_00052928 lncRNA upstream 87096 6308693 ~ 6376938 (-) False XLOC_026052
TCONS_00052929 lncRNA upstream 128641 6350238 ~ 6376938 (-) True XLOC_026052
TCONS_00050947 lncRNA upstream 172177 6393774 ~ 6417280 (-) True XLOC_026053
TCONS_00050941 mRNA downstream 28326 6180920 ~ 6191950 (-) True XLOC_026047
TCONS_00050940 mRNA downstream 30916 6178347 ~ 6189360 (-) False XLOC_026047
TCONS_00050939 mRNA downstream 184510 5991765 ~ 6035766 (-) True XLOC_026044
TCONS_00050938 mRNA downstream 255719 5882130 ~ 5964557 (-) False XLOC_026043
TCONS_00050937 mRNA downstream 390775 5778954 ~ 5829501 (-) True XLOC_026042
TCONS_00050945 mRNA upstream 57155 6278752 ~ 6281503 (-) True XLOC_026051
TCONS_00050946 mRNA upstream 158563 6380160 ~ 6417328 (-) False XLOC_026053
TCONS_00050948 mRNA upstream 201677 6423274 ~ 6441619 (-) False XLOC_026054
TCONS_00050949 mRNA upstream 201680 6423277 ~ 6441619 (-) True XLOC_026054
TCONS_00050951 mRNA upstream 268923 6490520 ~ 6519760 (-) False XLOC_026055
TCONS_00050934 other downstream 522544 5697609 ~ 5697732 (-) True XLOC_026039
TCONS_00050921 other downstream 894015 5326140 ~ 5326261 (-) True XLOC_026027
TCONS_00050895 other downstream 1763320 4444392 ~ 4456956 (-) False XLOC_026007
TCONS_00050872 other downstream 2837069 3383090 ~ 3383207 (-) True XLOC_025989
TCONS_00050862 other downstream 3034730 3181850 ~ 3185546 (-) False XLOC_025983
TCONS_00050944 other upstream 3945 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00051028 other upstream 2712042 8933639 ~ 8934476 (-) True XLOC_026113
TCONS_00051029 other upstream 2802888 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051030 other upstream 2810022 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051043 other upstream 3692675 9914272 ~ 9914389 (-) True XLOC_026128

Expression Profile

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