RNA id: TU1965927


Basic Information

Item Value
RNA id TU1965927
length 394
lncRNA type antisense_over
GC content 0.54
exon number 5
gene id G1715851
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21007162 ~ 21009324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCAGGGAGATGTAGACTGGTTGTCCACGAGAGGAGCTAATGTCCAGGACTCCGGCCGATGTGCAGTTCTTAGAGACCACGGAGTCCGTGCAGAAGCACTGATTGTCTGGGTTGACTGCAGGGGAGGCTAGGGTGAGCGGGGGCAGTTTGAACCGGTACACCTCGATCCCCTTCAGGTTCAGGCTCCTCTCATACTCAGCTGACACAGACCTGCTGATGTCAGGGGAGAAGAAGTACAGAGGCTTCTTCTTGTCCAGGAAGGGAGAGAATGACGAGCCATCTGTGCCGTTGATCATGTCGCAGTATGTGTTGTTCCAGAAAGACACCTTCTTTTCCCCCCGCCAGCTGTCAATGATAGACACTTTAGAGATGTCATCCTTGCCCGTGAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965903 lncRNA upstream 2726 21002851 ~ 21004436 (+) True LOC110499980
TU1965906 lncRNA upstream 6033 21000937 ~ 21001129 (+) False LOC110499980
TU1965835 lncRNA upstream 158647 20848238 ~ 20848515 (+) True G1715762
TU1965825 lncRNA upstream 165216 20841654 ~ 20841946 (+) True G1715752
TU1965824 lncRNA upstream 165586 20841359 ~ 20841576 (+) True G1715751
TU1965932 lncRNA downstream 2969 21012293 ~ 21015504 (+) True G1715855
TU1965936 lncRNA downstream 6521 21015845 ~ 21016095 (+) True G1715859
TU1966031 lncRNA downstream 129327 21138651 ~ 21139053 (+) False G1715945
TU1966032 lncRNA downstream 129327 21138651 ~ 21139053 (+) False G1715945
TU1966033 lncRNA downstream 129327 21138651 ~ 21139053 (+) False G1715945
XM_036957238.1 mRNA upstream 2723 20954576 ~ 21004439 (+) False LOC110499980
XM_021577068.2 mRNA upstream 2723 20962781 ~ 21004439 (+) False LOC110499980
XM_021577067.2 mRNA upstream 2723 20962819 ~ 21004439 (+) False LOC110499980
XM_021577065.2 mRNA upstream 63872 20931473 ~ 20943290 (+) False LOC110499979
XM_021577066.2 mRNA upstream 63872 20931500 ~ 20943290 (+) True LOC110499979
XM_036957240.1 mRNA downstream 8883 21018207 ~ 21039654 (+) True LOC110501024
XM_036957236.1 mRNA downstream 78030 21087354 ~ 21346670 (+) False LOC110499983
XM_036957235.1 mRNA downstream 78031 21087355 ~ 21346731 (+) False LOC110499983
XM_036957237.1 mRNA downstream 78031 21087355 ~ 21346731 (+) False LOC110499983
XM_036957227.1 mRNA downstream 78033 21087357 ~ 21350552 (+) False LOC110499983
TU1965907 other upstream 7025 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 448411 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 893271 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1383248 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 1166639 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1709595 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1773161 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1811428 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1840568 22849892 ~ 22851407 (+) True G1717517

Expression Profile