RNA id: TU1966031


Basic Information

Item Value
RNA id TU1966031
length 283
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1715945
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21138651 ~ 21139053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaacacagagagagagagagacagagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacacagagagagagagagagagagagagagagagacacagagagagagagacacagagagagagagacacagagagagagagacacacagagagagagagacacacagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965936 lncRNA upstream 122556 21015845 ~ 21016095 (+) True G1715859
TU1965932 lncRNA upstream 123147 21012293 ~ 21015504 (+) True G1715855
TU1965927 lncRNA upstream 129327 21007162 ~ 21009324 (+) False G1715851
TU1965928 lncRNA upstream 130396 21007162 ~ 21008255 (+) True G1715851
TU1965903 lncRNA upstream 134215 21002851 ~ 21004436 (+) True LOC110499980
TU1966064 lncRNA downstream 27858 21166911 ~ 21167360 (+) True G1715966
TU1966159 lncRNA downstream 177350 21316403 ~ 21316637 (+) True G1716061
TU1966176 lncRNA downstream 281454 21420507 ~ 21423854 (+) True G1716078
TU1965984 lncRNA downstream 312067 21451120 ~ 21452381 (+) True G1715904
TU1965990 lncRNA downstream 411488 21550541 ~ 21553761 (+) True G1715907
XM_036957240.1 mRNA upstream 98997 21018207 ~ 21039654 (+) True LOC110501024
XM_036957238.1 mRNA upstream 134212 20954576 ~ 21004439 (+) False LOC110499980
XM_021577068.2 mRNA upstream 134212 20962781 ~ 21004439 (+) False LOC110499980
XM_021577067.2 mRNA upstream 134212 20962819 ~ 21004439 (+) False LOC110499980
XM_021577065.2 mRNA upstream 195361 20931473 ~ 20943290 (+) False LOC110499979
XM_036957233.1 mRNA downstream 19318 21158371 ~ 21350552 (+) False LOC110499983
XM_036957234.1 mRNA downstream 19318 21158371 ~ 21350552 (+) True LOC110499983
XM_036957242.1 mRNA downstream 217970 21357023 ~ 21410835 (+) False LOC110499985
XM_036957241.1 mRNA downstream 217971 21357024 ~ 21410835 (+) True LOC110499985
XM_021577079.2 mRNA downstream 286517 21425570 ~ 21448889 (+) True LOC110499986
TU1965907 other upstream 138514 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 579900 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1024760 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1514737 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 1036910 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1579866 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1643432 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1681699 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1710839 22849892 ~ 22851407 (+) True G1717517

Expression Profile