RNA id: TU1966176


Basic Information

Item Value
RNA id TU1966176
length 286
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1716078
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21420507 ~ 21423854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGCTGTGGTCTCGACATAGCTCTCTGGGACCTTGGGGAAGGCATCCAGCTCCTTAACCAGACTCAGGGCTTTCTTCCTGTACAGACGCCTCATCTTCAGGACCACTCTCCACGTCCTCCCTTCATACACCTTACCTTGGTTTCATGCGTCTATACTCCGGTAAATTGATTGCAAAGCAGGTATCAATTCATAACATTATAACGAGTGAAAAAAGACGTTTGTTAGCTTCTAGCGTTCTTCACCGGGTGCTGTCTTGTTTTAGCAACACGACCACCCACTAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1966159 lncRNA upstream 103870 21316403 ~ 21316637 (+) True G1716061
TU1966064 lncRNA upstream 253147 21166911 ~ 21167360 (+) True G1715966
TU1966031 lncRNA upstream 281454 21138651 ~ 21139053 (+) False G1715945
TU1965984 lncRNA downstream 27266 21451120 ~ 21452381 (+) True G1715904
TU1965990 lncRNA downstream 126687 21550541 ~ 21553761 (+) True G1715907
TU1966223 lncRNA downstream 130410 21554264 ~ 21554515 (+) True G1716118
TU1965987 lncRNA downstream 167834 21591688 ~ 21593104 (+) True G1715905
TU1966230 lncRNA downstream 173042 21596896 ~ 21597103 (+) True G1716125
XM_036957242.1 mRNA upstream 9672 21357023 ~ 21410835 (+) False LOC110499985
XM_036957241.1 mRNA upstream 9672 21357024 ~ 21410835 (+) True LOC110499985
XM_036957227.1 mRNA upstream 69955 21087357 ~ 21350552 (+) False LOC110499983
XM_036957228.1 mRNA upstream 69955 21087357 ~ 21350552 (+) False LOC110499983
XM_036957229.1 mRNA upstream 69955 21087357 ~ 21350552 (+) False LOC110499983
XM_021577079.2 mRNA downstream 1716 21425570 ~ 21448889 (+) True LOC110499986
XM_036957256.1 mRNA downstream 31991 21455845 ~ 21485720 (+) False LOC110501025
XM_036957257.1 mRNA downstream 31991 21455845 ~ 21485720 (+) False LOC110501025
XM_036957259.1 mRNA downstream 31991 21455845 ~ 21485720 (+) False LOC110501025
XM_036957247.1 mRNA downstream 31992 21455846 ~ 21485720 (+) False LOC110501025
TU1965907 other upstream 420370 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 861756 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1306616 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1796593 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 752109 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1295065 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1358631 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1396898 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1426038 22849892 ~ 22851407 (+) True G1717517

Expression Profile