RNA id: TU1966223


Basic Information

Item Value
RNA id TU1966223
length 252
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1716118
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21554264 ~ 21554515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctggtgacatcaccaagcTGTAAATGATTTAATAGACCAATAAAAGAGTTCAAAACCTCTCGGCCAATAACAGCTAAtattcagttttcccctccctactcagacaactcccagacagtcctagcaaaattcttgcttgagaaattgctctttgacaattttaattaaaccatcacagtaaggtacttaattgttagccagaaatgatttgatattgagatttaaaaaattgctgcattggaccttaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965990 lncRNA upstream 503 21550541 ~ 21553761 (+) True G1715907
TU1965984 lncRNA upstream 101883 21451120 ~ 21452381 (+) True G1715904
TU1966176 lncRNA upstream 130410 21420507 ~ 21423854 (+) True G1716078
TU1966159 lncRNA upstream 237627 21316403 ~ 21316637 (+) True G1716061
TU1966064 lncRNA upstream 386904 21166911 ~ 21167360 (+) True G1715966
TU1965987 lncRNA downstream 37173 21591688 ~ 21593104 (+) True G1715905
TU1966230 lncRNA downstream 42381 21596896 ~ 21597103 (+) True G1716125
TU1966259 lncRNA downstream 91113 21645628 ~ 21645860 (+) True G1716154
TU1966391 lncRNA downstream 281685 21836200 ~ 21839060 (+) False G1716267
TU1966392 lncRNA downstream 282473 21836988 ~ 21839060 (+) True G1716267
XM_021577084.2 mRNA upstream 7759 21535960 ~ 21546505 (+) True LOC110499992
XM_021577080.2 mRNA upstream 62659 21488422 ~ 21491605 (+) True LOC110499987
XM_036957249.1 mRNA upstream 68544 21456431 ~ 21485720 (+) False LOC110501025
XM_036957260.1 mRNA upstream 68544 21469795 ~ 21485720 (+) True LOC110501025
XM_036957261.1 mRNA upstream 70646 21455851 ~ 21483618 (+) False LOC110501025
XM_036957264.1 mRNA downstream 4026 21558541 ~ 21582813 (+) False LOC110499994
XM_036957263.1 mRNA downstream 4027 21558542 ~ 21582813 (+) False LOC110499994
XM_036957265.1 mRNA downstream 4027 21558542 ~ 21582813 (+) True LOC110499994
XM_021577088.2 mRNA downstream 28417 21582932 ~ 21591673 (+) False LOC110499995
XM_036957267.1 mRNA downstream 28911 21583426 ~ 21591673 (+) False LOC110499995
TU1965907 other upstream 554127 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 995513 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1440373 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1930350 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 621448 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1164404 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1227970 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1266237 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1295377 22849892 ~ 22851407 (+) True G1717517

Expression Profile