RNA id: TU1967072



Basic Information


Item Value
RNA id TU1967072
length 297
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1716898
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21890518 ~ 21890814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTTCCTCTTCTCGTGAGAAGACAAGACTGGGGCTGATAAATGGGTTTGATGGATCACCTGTCACAGAGAGATTGAAGCACAGTGTGCTGAAATCCTTAGATGACGTGTGACTTAATCCAGTACAGGAGGGAGAAATCTGAAACTTACTCCTGCAGCCTGTCAGGTTCTTCCACAGGACTTAATTATGCACGCCTTCTCCCAGAGTCAAAATCAAATCACTGCAGAGGTTTTCTTTTCCAGCTCTCAATATAAAGGGAAATGTTTTAGCCCAAAGTTTGGCGCCCATTTCTAAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1967062 lncRNA upstream 10286 21879990 ~ 21880232 (+) True G1716888
TU1967059 lncRNA upstream 12349 21877874 ~ 21878169 (+) True G1716885
TU1967057 lncRNA upstream 13893 21876304 ~ 21876625 (+) True G1716883
TU1967055 lncRNA upstream 18179 21872120 ~ 21872339 (+) True G1716881
TU1966263 lncRNA upstream 20780 21867007 ~ 21869738 (+) True LOC110499997
TU1967079 lncRNA downstream 5064 21895878 ~ 21896108 (+) True G1716905
TU1967113 lncRNA downstream 95446 21986260 ~ 21990776 (+) False G1716935
TU1967114 lncRNA downstream 95446 21986260 ~ 21987287 (+) False G1716935
TU1967116 lncRNA downstream 95446 21986260 ~ 21990776 (+) True G1716935
TU1967187 lncRNA downstream 128513 22019327 ~ 22019604 (+) True G1716998
XM_036957276.1 mRNA upstream 20773 21650654 ~ 21869745 (+) False LOC110499997
XM_021577094.2 mRNA downstream 29703 21920517 ~ 21948205 (+) False LOC110499998
XM_021577092.2 mRNA downstream 29704 21920518 ~ 21948205 (+) False LOC110499998
XM_021577093.2 mRNA downstream 29704 21920518 ~ 21948205 (+) True LOC110499998
XM_021577099.2 mRNA downstream 100404 21991218 ~ 22007807 (+) False LOC100653451
XM_036957280.1 mRNA downstream 100404 21991218 ~ 22007807 (+) True LOC100653451
TU1965907 other upstream 890381 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1331767 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1776627 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2266604 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 285149 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 828105 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 891671 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 929938 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 959078 22849892 ~ 22851407 (+) True G1717517

Expression Profile