RNA id: TU1967114



Basic Information


Item Value
RNA id TU1967114
length 659
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G1716935
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21986260 ~ 21990776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTAACGGTAAGACTTCTGGTAGCGGGCACGGGCTCCTGGTCCACCAAACTTCTTGGACTCGCAGCGACGAGGATCGGCAACCAGCAGAGTCCTGTCGTACTGGATCAAGATGTCCTTAATCTCCTTCTTGGAGGCCTCATCCACATATTTCTGGTAGTATGCGACCAGGGCTTTGGAGATGGACTGACGGATAGCGTAGATCTGTGCTACATGTCCACCACCCTTCACTCGGACTCGGATGTCAACTCCAGCAAAACGCTCCTTGCCCAGCAGCAGCACTGGCTCCAGCAGCTACAACAGAGAGGGAATTTGTCAAGGAAGCACACAGTCTATACATCCTGCAGACACACATTCAGCTAAATGTCTGGACACAACCAGACATTTAGCTGAATGAAGACCCATGTTGAATTTGGGCTTAGTAAACCAACAGCAGCTCTGTAAGAAGCCACGTTACACATCATGAAATAGTTAGCGACTGTTTCCTAAGGGACAGATTGGAATTTACCAGAGGGGGGCTGGTTCAACCCAAGGTGTCAGAATGCACAACCCTCATCAACAAAAATGTTTTCCTCACATGACCCTCCACTTGTACAGTCAAATAAATGGAAGCCCCTCAGAATTAACTCAATgttcacaaaaaataaaaaatagcaaCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1967079 lncRNA upstream 90152 21895878 ~ 21896108 (+) True G1716905
TU1967072 lncRNA upstream 95446 21890518 ~ 21890814 (+) True G1716898
TU1967062 lncRNA upstream 106028 21879990 ~ 21880232 (+) True G1716888
TU1967059 lncRNA upstream 108091 21877874 ~ 21878169 (+) True G1716885
TU1967057 lncRNA upstream 109635 21876304 ~ 21876625 (+) True G1716883
TU1967187 lncRNA downstream 32040 22019327 ~ 22019604 (+) True G1716998
TU1967193 lncRNA downstream 48210 22035497 ~ 22036125 (+) True G1717004
TU1967199 lncRNA downstream 61948 22049235 ~ 22049439 (+) True G1717010
TU1967202 lncRNA downstream 66176 22053463 ~ 22054023 (+) True G1717013
TU1967204 lncRNA downstream 68006 22055293 ~ 22055546 (+) True G1717015
XM_021577094.2 mRNA upstream 38055 21920517 ~ 21948205 (+) False LOC110499998
XM_021577092.2 mRNA upstream 38055 21920518 ~ 21948205 (+) False LOC110499998
XM_021577093.2 mRNA upstream 38055 21920518 ~ 21948205 (+) True LOC110499998
XM_036957277.1 mRNA upstream 116515 21650655 ~ 21869745 (+) False LOC110499997
XM_021577099.2 mRNA downstream 3931 21991218 ~ 22007807 (+) False LOC100653451
XM_036957280.1 mRNA downstream 3931 21991218 ~ 22007807 (+) True LOC100653451
XM_036957285.1 mRNA downstream 22679 22009966 ~ 22011099 (+) True LOC110500917
LOC110501027 mRNA downstream 130694 22117981 ~ 22119671 (+) True LOC110501027
XM_036957287.1 mRNA downstream 154405 22141692 ~ 22175639 (+) False LOC110500003
TU1965907 other upstream 986123 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1427509 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1872369 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2362346 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 188676 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 731632 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 795198 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 833465 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 862605 22849892 ~ 22851407 (+) True G1717517

Expression Profile