RNA id: TU1967360



Basic Information


Item Value
RNA id TU1967360
length 2077
RNA type TUCP
GC content 0.44
exon number 9
gene id G1717161
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22175963 ~ 22180897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTgcatttgtattttattgatcTCAATATAACATGTTGCATAATGAAACCATATTTCAAGTGCTGTAAAGACATTTAAGCACAAAGACTCCAGTAACAGCTTCAAGATATCCTCCCTTTAGTCACTTTCTGCAACAATATGGAATAAGTACATCAATGTGCAAAGTTATACATTACACTTCAGGGAATAGTTTGCAGTGGAAGCAACTGAGCAGTATTATGGTCATGTCTTCAGCTGTGCATACAAATAAGTATTGCTAAGGCACTCAAGtaaaattatactgaacaaaaacatgcaAAGTGGTTTCATGAGCAGAAATGTTCCAGTTGCACAAAGCTTATTTTcattctgtaaaaaaaaagtgtttacttccctgttagtgagaatttctcctaagtgcaccttgtgctggggacacaaAAGCCAGGAGTATTTGTCTaacaaagcccttttgtggagaaaaactcattctgattggctcccAAAAAGTAGGCCtatgtcatgtgaaatccatagactagggcctaattcatttaacTTAAGAGTTTAGGAGGAAATCAgttgtttatattttgttcagtacacAGGTATCAGTCACAATTAGTTTGACAGGAAGAACATTCAAATAATTGTTTCCTCCAACTACCAGTTACTCAATTCAGAATGAAATCAGAAAATGCTTTAGACACCACTCATTTCAGGATTCTGTTTTGGAAATTAAGGCACACCAAATTACAGAAAATGGTCCACTAATTCTGCTGTAGGATAAGTGAAATGATTTCAACAGATGATCAAGCGCTGATGCAAGAGTTTTAATAAATGTTGGGTGTGGCTGATCATTGAGCCCCTTTAACCCCTCGCCTGGGATGGCTTCTAAAAGGTGAACCTCCGGCTGCTGGCGTGGCCCACTTTGTCCAGGTTGGGGTTACAGGCAAACTGGATCATGGGAGGCGGTCCGCACAGGAGGATGAGAGTGTCGTCTCCAGGGGGTGGAAGGTGGTCCCTCACCATGTCTTCACTGATGAAGCCTTGGCTGTACTCCCACTCCTCAGGAGCCCTGTCCAGGGTGAACCATAGCTTGAACCGGGTTGGGTGATTCGCTGCGATCTCCTCCAACTCCGGTCGAAGCAAGATGTCTTTCTCAGTCTGGTTGGCGAAGAGCAGATGACACACTGTCTGGTCCTGGGGATCCTTCATTATAGCTGTGATGAGCTGCAGCATGGGAGTGATTCcagtccctcctgcgATCATGCCCACTTGCTTGGCAGTTTTGATCACAGGCTCCGCCTTTTTTTCTGCCTTGATGGCAAAAGCCCCGTTTCCTTGGTAGACCAGCAGGCCGCTGGGCCCTCTGAAATCAATAGTGTCGCCAATCCGGAGGCTCTCCAAGTACTGACTCATCTTCCCACCTTCAGGAAACTTTGGATTAACGTTCTTGTAGTAAATCTTCACTACCAGGTCTACGAAGCCTAAGTCGTCATCACTAGACACAGGTGTGTACGGTCTGACCACCAGGACTCCATCCAGTTTGGCAGACAGGTATATGTGTTGCCCAATGGGTAGCCCAAGGACATGATCCTTTTCCCGCAGGGCAAAACGGAATTTCCTTGTGTCATGACTGATGATCTCTTTATCTATCAGCTTTAATGCATATTTGATGTTGGGGTCCTCTAGGGTGATGGCAGGTTTCTTCTTTGAGAGGAAGAGGCTCACGATGAGGTTGATAATGTTGTCAATACTGCTCCGAATGAGCCCAATGATGTAAGACAGCATCTTGTTTTTAACACCTTACAAGGCAACAGCGAAAAGTCTGTTCTCCGAGGAAAAACCGTCGCGCTGTCAAAGTACTGACTCCGGGGCTTTCAAGGCAACTAGGAACTCGGaaaaaatacgaggtcaaatcatgacgtcggTGATCGGAAAGTTGGAGTTCTAGGAGAGGCCCGAATTCacgagttggaattccgagttggatgacctttcAAAACGATGTTTCGCACTCTGAGTTTTTTTTCTCGCAAATTCACAgctgtcttgaacgcactgaagtcgtaCATCAGATATTTTTGAGTtcaca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1967406 lncRNA upstream 40034 22135665 ~ 22135929 (+) True G1717204
TU1967401 lncRNA upstream 49320 22126312 ~ 22126643 (+) True G1717199
TU1967397 lncRNA upstream 53880 22121655 ~ 22122083 (+) True G1717195
TU1967396 lncRNA upstream 54902 22120850 ~ 22121061 (+) True G1717194
TU1967214 lncRNA upstream 112063 22063403 ~ 22063900 (+) True G1717025
TU1967414 lncRNA downstream 3520 22184417 ~ 22184659 (+) True G1717212
TU1967420 lncRNA downstream 9543 22190440 ~ 22190541 (+) True G1717218
TU1967419 lncRNA downstream 9903 22190800 ~ 22191215 (+) True G1717217
TU1967448 lncRNA downstream 55964 22236861 ~ 22270892 (+) True G1717246
TU1967567 lncRNA downstream 241234 22422131 ~ 22422412 (+) True G1717364
XM_036957287.1 mRNA upstream 324 22141692 ~ 22175639 (+) False LOC110500003
XM_036957286.1 mRNA upstream 324 22142803 ~ 22175639 (+) False LOC110500003
XM_036957288.1 mRNA upstream 324 22142804 ~ 22175639 (+) False LOC110500003
XM_036957289.1 mRNA upstream 324 22142804 ~ 22175639 (+) False LOC110500003
XM_036957290.1 mRNA upstream 324 22142805 ~ 22175639 (+) True LOC110500003
XM_036958468.1 mRNA downstream 145830 22326727 ~ 22337006 (+) True LOC118943003
XM_021577138.2 mRNA downstream 533229 22714126 ~ 22716877 (+) False LOC110500014
XR_002470055.2 mRNA downstream 548294 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA downstream 548294 22729191 ~ 22730990 (+) True LOC110500032
XM_021577146.2 mRNA downstream 713861 22894758 ~ 22914536 (+) False LOC110500034
TU1965907 other upstream 1175826 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1617212 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 2062072 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2552049 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 2552049 19617394 ~ 19623914 (+) False G1714090
TU1967725 other downstream 538022 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 601588 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 639855 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 668995 22849892 ~ 22851407 (+) True G1717517
TU1967841 other downstream 833909 23014806 ~ 23022764 (+) True LOC110500038

Expression Profile


TU1967360 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 300.
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TU1967360 Expression in each Bioproject

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TU1967360 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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