RNA id: TU1967414


Basic Information

Item Value
RNA id TU1967414
length 243
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1717212
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22184417 ~ 22184659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAAGAAAGTCTGATTTccttattattaaaacaagacccaggtagtaagtataaagatccagtccatttaaaaaactggaggcctcttacacttcaatgttgtgatgcaaaactCCTGGCGCAATGCATAGCACATAGAATAAAAAAGGTTTTACCAGAtgttgttcatcctgatcagacaggttttttacatggacaatatATTGgagagcaaatcaaatcaaatcaaatgtatttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967406 lncRNA upstream 48488 22135665 ~ 22135929 (+) True G1717204
TU1967401 lncRNA upstream 57774 22126312 ~ 22126643 (+) True G1717199
TU1967397 lncRNA upstream 62334 22121655 ~ 22122083 (+) True G1717195
TU1967396 lncRNA upstream 63356 22120850 ~ 22121061 (+) True G1717194
TU1967214 lncRNA upstream 120517 22063403 ~ 22063900 (+) True G1717025
TU1967420 lncRNA downstream 5781 22190440 ~ 22190541 (+) True G1717218
TU1967419 lncRNA downstream 6141 22190800 ~ 22191215 (+) True G1717217
TU1967448 lncRNA downstream 52202 22236861 ~ 22270892 (+) True G1717246
TU1967567 lncRNA downstream 237472 22422131 ~ 22422412 (+) True G1717364
TU1967708 lncRNA downstream 479083 22663742 ~ 22663958 (+) True G1717500
XM_036957287.1 mRNA upstream 8778 22141692 ~ 22175639 (+) False LOC110500003
XM_036957286.1 mRNA upstream 8778 22142803 ~ 22175639 (+) False LOC110500003
XM_036957288.1 mRNA upstream 8778 22142804 ~ 22175639 (+) False LOC110500003
XM_036957289.1 mRNA upstream 8778 22142804 ~ 22175639 (+) False LOC110500003
XM_036957290.1 mRNA upstream 8778 22142805 ~ 22175639 (+) True LOC110500003
XM_036958468.1 mRNA downstream 142068 22326727 ~ 22337006 (+) True LOC118943003
XM_021577138.2 mRNA downstream 529467 22714126 ~ 22716877 (+) False LOC110500014
XR_002470055.2 mRNA downstream 544532 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA downstream 544532 22729191 ~ 22730990 (+) True LOC110500032
XM_021577146.2 mRNA downstream 710099 22894758 ~ 22914536 (+) False LOC110500034
TU1967360 other upstream 3520 22175963 ~ 22180897 (+) True G1717161
TU1965907 other upstream 1184280 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1625666 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 2070526 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2560503 19602461 ~ 19623914 (+) False G1714090
TU1967725 other downstream 534260 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 597826 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 636093 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 665233 22849892 ~ 22851407 (+) True G1717517
TU1967841 other downstream 830147 23014806 ~ 23022764 (+) True LOC110500038

Expression Profile