RNA id: TU1967748


Basic Information

Item Value
RNA id TU1967748
length 422
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1717538
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22737771 ~ 22743135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTTTGTTCTTAAATTTAAGGTTGGGTTAGGTGGGGTTTTTCAGAATTATGACTTTGTTGCTGTGTTAGGTAGTGACGACCCAGTTTCACTCTCTGAAATACCCTAGACTGGGACAGATGTGGAGAGAGGGGTTGGGCTGGTATAAACCTCTATGGTTGTTTGgcttctgatatttttttatatgatAACTACTACCCTAACTCATGGAATTGTTCTAAAATAGTAATAACATGGTCCAAAAAGCAATTTCATTCTCtatttgtcacgacttctaccgagggtaacttctctccctgttcgggcggcgctcggcgctcggcgtcgccggtctactagccactaccgatccctttttctttttctggttgttttgtctgtgttccttttcacacctggttttcaattgctttgatttctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967723 lncRNA upstream 23499 22713864 ~ 22714272 (+) True LOC110500014
TU1967722 lncRNA upstream 24003 22713545 ~ 22713768 (+) True G1717514
TU1967708 lncRNA upstream 73813 22663742 ~ 22663958 (+) True G1717500
TU1967567 lncRNA upstream 315359 22422131 ~ 22422412 (+) True G1717364
TU1967448 lncRNA upstream 466879 22236861 ~ 22270892 (+) True G1717246
TU1967733 lncRNA downstream 59996 22803131 ~ 22834858 (+) True G1717523
TU1967732 lncRNA downstream 60290 22803425 ~ 22848933 (+) True G1717522
TU1967736 lncRNA downstream 122696 22865831 ~ 22873187 (+) True G1717526
TU1967734 lncRNA downstream 135374 22878509 ~ 22881503 (+) True G1717524
TU1967875 lncRNA downstream 214540 22957675 ~ 22962698 (+) True G1717642
XR_002470055.2 mRNA upstream 6781 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA upstream 6781 22729191 ~ 22730990 (+) True LOC110500032
XM_021577138.2 mRNA upstream 20894 22714126 ~ 22716877 (+) False LOC110500014
XM_036958468.1 mRNA upstream 400765 22326727 ~ 22337006 (+) True LOC118943003
XM_036957286.1 mRNA upstream 562132 22142803 ~ 22175639 (+) False LOC110500003
XM_021577146.2 mRNA downstream 151623 22894758 ~ 22914536 (+) False LOC110500034
XM_036957319.1 mRNA downstream 152058 22895193 ~ 22914536 (+) True LOC110500034
XM_036957320.1 mRNA downstream 171696 22914831 ~ 22920359 (+) True LOC110501029
XM_036957329.1 mRNA downstream 271482 23014617 ~ 23032420 (+) False LOC110500038
XM_036957328.1 mRNA downstream 271747 23014882 ~ 23032420 (+) False LOC110500038
TU1967725 other upstream 16697 22718919 ~ 22721074 (+) False G1717516
TU1967360 other upstream 556874 22175963 ~ 22180897 (+) True G1717161
TU1965907 other upstream 1737634 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 2179020 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 2623880 20109198 ~ 20113891 (+) True nmes1
TU1967724 other downstream 39350 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 77617 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 106757 22849892 ~ 22851407 (+) True G1717517
TU1967841 other downstream 271671 23014806 ~ 23022764 (+) True LOC110500038
TU1967919 other downstream 355880 23099015 ~ 23100809 (+) False ruxf

Expression Profile