RNA id: TU1967727



Basic Information


Item Value
RNA id TU1967727
length 538
RNA type TUCP
GC content 0.53
exon number 2
gene id G1717517
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22849892 ~ 22851407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTTTTGTATGGCGACTTAACCATTATGAATCGTTGTGGTGGACTTTTGGAAGCGGAACAAAACTAGTGCTGAAAActgGTCCCTCTATCAGACCCACAGTGTCTCTGCTCCCCCCGTCCTCTGAGCAGCTCTTCGGGGGCTCGGCCACACTGGCCTGCCTGCTGAGTGGCTACTCCCCCCAGGGGGCGATGGTGAGCTGGGAGGTGGatggggaggaggtgaaggatgGGGTCCTGACCTccacagaagaagagaagggcGGCCACTACAGCCGCAGCAGCACCCTGACCCTGAGCAAGGCACgctgggaagagggagaggtgtaCACCTGCAGGGTCGCCCATGAAGACACCAGTGATTCGGCCGCCTTCCGGAAAAGTCACTGTAGTGTCTAGGGACCGGAGAAGCCATTGTAGGAGGCTAGAGAGTCCACACATATTTGTGTTTTAGAGCTGAATGTTACAGTATAGTAGTGAATCATTTCAGGAGTGATGTGTGCCAAAATGAAGTATTTTGTGATTAAGTTGTAAATGTAA

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1967732 lncRNA upstream 959 22803425 ~ 22848933 (+) True G1717522
TU1967733 lncRNA upstream 15034 22803131 ~ 22834858 (+) True G1717523
TU1967748 lncRNA upstream 106757 22737771 ~ 22743135 (+) True G1717538
TU1967723 lncRNA upstream 135620 22713864 ~ 22714272 (+) True LOC110500014
TU1967722 lncRNA upstream 136124 22713545 ~ 22713768 (+) True G1717514
TU1967736 lncRNA downstream 14424 22865831 ~ 22873187 (+) True G1717526
TU1967734 lncRNA downstream 27102 22878509 ~ 22881503 (+) True G1717524
TU1967875 lncRNA downstream 106268 22957675 ~ 22962698 (+) True G1717642
TU1967882 lncRNA downstream 122402 22973809 ~ 22974014 (+) True G1717649
TU1967883 lncRNA downstream 122673 22974080 ~ 22974317 (+) True G1717650
XR_002470055.2 mRNA upstream 118902 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA upstream 118902 22729191 ~ 22730990 (+) True LOC110500032
XM_021577138.2 mRNA upstream 133015 22714126 ~ 22716877 (+) False LOC110500014
XM_036958468.1 mRNA upstream 512886 22326727 ~ 22337006 (+) True LOC118943003
XM_036957290.1 mRNA upstream 674253 22142805 ~ 22175639 (+) True LOC110500003
XM_021577146.2 mRNA downstream 43351 22894758 ~ 22914536 (+) False LOC110500034
XM_036957319.1 mRNA downstream 43786 22895193 ~ 22914536 (+) True LOC110500034
XM_036957320.1 mRNA downstream 63424 22914831 ~ 22920359 (+) True LOC110501029
XM_036957329.1 mRNA downstream 163210 23014617 ~ 23032420 (+) False LOC110500038
XM_036957328.1 mRNA downstream 163475 23014882 ~ 23032420 (+) False LOC110500038
TU1967724 other upstream 65447 22782485 ~ 22784445 (+) True G1717516
TU1967725 other upstream 128818 22718919 ~ 22721074 (+) False G1717516
TU1967360 other upstream 668995 22175963 ~ 22180897 (+) True G1717161
TU1965907 other upstream 1849755 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 2291141 20558422 ~ 20558751 (+) True G1715392
TU1967841 other downstream 163399 23014806 ~ 23022764 (+) True LOC110500038
TU1967919 other downstream 247608 23099015 ~ 23100809 (+) False ruxf
TU1967920 other downstream 247608 23099015 ~ 23100631 (+) True ruxf
TU1968049 other downstream 404719 23256126 ~ 23256812 (+) False G1717785
TU1968048 other downstream 404959 23256366 ~ 23256812 (+) True G1717785

Expression Profile