RNA id: TU1968066



Basic Information


Item Value
RNA id TU1968066
length 325
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1717800
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23274731 ~ 23275055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCAGGCCATTCTTAAACCTGACCGAAAGGAACATTCAACATTGTAAAGGTGTCTGGGAAACAGAGAGAACAAATATCAAtgaacacaaacagacacagaacACATGGCAGGTCCAATCATTTCAGGTCATTTCTCAATTGCAAAGAGTGCAGAAAAAGTATAGAAACACTATTGTAGACCAAGACAAATGTATCAACTTTAGATGAACTAATGCTGATGGAGAGAGTGTTGAGATGAACTGCTTTCAAAGGAAGACTATCTATATCACTCAGTGGAGCCCGGCCAATAACAATGGCTACAGCAAACAAAACCAatgcaaagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1968060 lncRNA upstream 8045 23266296 ~ 23266686 (+) True G1717794
TU1968058 lncRNA upstream 12237 23262295 ~ 23262494 (+) True G1717792
TU1968057 lncRNA upstream 12859 23261670 ~ 23261872 (+) True G1717791
TU1968056 lncRNA upstream 13093 23261335 ~ 23261638 (+) True G1717790
TU1968055 lncRNA upstream 13682 23260145 ~ 23261049 (+) True G1717789
TU1968089 lncRNA downstream 54534 23329589 ~ 23330057 (+) True G1717822
TU1968130 lncRNA downstream 147635 23422690 ~ 23423731 (+) True LOC110500058
TU1968145 lncRNA downstream 168636 23443691 ~ 23444109 (+) True G1717875
TU1968974 lncRNA downstream 211044 23486099 ~ 23486376 (+) True G1718589
TU1968982 lncRNA downstream 214287 23489342 ~ 23489551 (+) True G1718597
XM_021577164.2 mRNA upstream 53966 23218944 ~ 23220765 (+) True ascl1a
XM_021577163.2 mRNA upstream 85075 23164105 ~ 23189656 (+) True LOC110500046
XM_021577162.2 mRNA upstream 114058 23157083 ~ 23160673 (+) False klhl42
XM_021577156.2 mRNA upstream 169725 23100978 ~ 23105006 (+) True amdhd1
NM_001160558.1 mRNA upstream 173915 23099028 ~ 23100816 (+) False ruxf
XM_021577165.2 mRNA downstream 20728 23295783 ~ 23313876 (+) True LOC110500049
XM_021577167.2 mRNA downstream 39280 23314335 ~ 23327014 (+) True th2
XM_036958469.1 mRNA downstream 66133 23341188 ~ 23353769 (+) True LOC110500052
XM_036957345.1 mRNA downstream 118472 23393527 ~ 23397736 (+) True LOC110500056
XM_036957346.1 mRNA downstream 130407 23405462 ~ 23423738 (+) False LOC110500058
TU1968049 other upstream 17919 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 17919 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 173922 23099015 ~ 23100809 (+) False ruxf
TU1967920 other upstream 174100 23099015 ~ 23100631 (+) True ruxf
TU1967841 other upstream 251967 23014806 ~ 23022764 (+) True LOC110500038
TU1969665 other downstream 798350 24073405 ~ 24074448 (+) True G1719225
TU1969708 other downstream 860709 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 1002776 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 1041583 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 2336761 25611816 ~ 25612268 (+) True G1720836

Expression Profile