RNA id: TU1968997



Basic Information


Item Value
RNA id TU1968997
length 464
lncRNA type read_through
GC content 0.49
exon number 2
gene id G1718611
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23523033 ~ 23554590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tagttgaatgtgctgacaacaaaatcacacaaaaattatcaatggaaatcaaatttatcaacccatggaggtctggatttggagtcacactcaaaattagtgtggaaaaccacactacaggctgatccaactttgatgtaaagtccttaaaacaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctccctacaatgactgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtctgttggtggatggagtgagacatgatgtcccagatgcgctcaattggattcaggtctggggaaagggcgggccagtccatagcaccaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgtcttgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1968996 lncRNA upstream 271 23522449 ~ 23522762 (+) True G1718610
TU1968994 lncRNA upstream 1246 23520687 ~ 23521787 (+) True G1718609
TU1968988 lncRNA upstream 9034 23513752 ~ 23513999 (+) True G1718603
TU1968982 lncRNA upstream 33482 23489342 ~ 23489551 (+) True G1718597
TU1968974 lncRNA upstream 36657 23486099 ~ 23486376 (+) True G1718589
TU1969075 lncRNA downstream 16033 23570623 ~ 23572286 (+) True G1718685
TU1969079 lncRNA downstream 23767 23578357 ~ 23578624 (+) True G1718689
TU1969081 lncRNA downstream 26299 23580889 ~ 23581147 (+) True G1718691
TU1969086 lncRNA downstream 30392 23584982 ~ 23585328 (+) True G1718696
TU1969092 lncRNA downstream 38465 23593055 ~ 23593510 (+) True G1718701
XM_021577209.2 mRNA upstream 12475 23505048 ~ 23510558 (+) True ada2b
XM_021577210.2 mRNA upstream 18222 23501124 ~ 23504811 (+) True LOC110500067
XM_036957346.1 mRNA upstream 99295 23405462 ~ 23423738 (+) False LOC110500058
XM_036957345.1 mRNA upstream 125297 23393527 ~ 23397736 (+) True LOC110500056
XM_036958469.1 mRNA upstream 169264 23341188 ~ 23353769 (+) True LOC110500052
XM_021577217.2 mRNA downstream 59548 23614138 ~ 23622406 (+) False LOC110500071
XM_021577219.2 mRNA downstream 86800 23641390 ~ 23644750 (+) True LOC110500073
XR_005038558.1 mRNA downstream 153872 23708462 ~ 23709161 (+) False LOC118942913
XM_021577228.2 mRNA downstream 155679 23710269 ~ 23732051 (+) False LOC110500077
XM_036957359.1 mRNA downstream 155696 23710286 ~ 23732051 (+) False LOC110500077
TU1968049 other upstream 266221 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 266221 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 422224 23099015 ~ 23100809 (+) False ruxf
TU1967920 other upstream 422402 23099015 ~ 23100631 (+) True ruxf
TU1967841 other upstream 500269 23014806 ~ 23022764 (+) True LOC110500038
TU1969665 other downstream 518815 24073405 ~ 24074448 (+) True G1719225
TU1969708 other downstream 581174 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 723241 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 762048 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 2057226 25611816 ~ 25612268 (+) True G1720836

Expression Profile