RNA id: TU1969016



Basic Information


Item Value
RNA id TU1969016
length 754
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1718629
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23548116 ~ 23549040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGAACAAAACCTACTGTTTGATTGGTTTGTTGTGTACAGTACCTTCAGTGGGATGTTCCAGGCAATGTTGACATTATGTTTGTAGTCATCCATCCagacctcagccactctcagagcATTCCTCTTCATTGTAATGCTCAGGTCGGGGAGATAGGGTTTATGGGCCCTCTCGATGTGGGCTATTTTAGAACAAGGTATGACCTCGACACTTCCACCACATAGCCACACCTCGACACACCGGATACCCAGTTCAACATTTTCCCCTCCATAGATCTTCATACCACCATCCAGAGCACCAATTTCCCCAAAGAACAGGCGATCAACCACTAGTATGCCCATAATGGAGGGGCTCCTGACAAACATACAGTACAAATCATGGTCATTTCCACATTGGGAGAAGTGACATTCATTTAATGAATATATAACGCAAAATAATAGTCCAGGTGTAAATATTAGGTATGATTTTCATCCCAATGCTGTGCTTTCCTTATCGTCTATTCAAACAGATTTGTGAAACTGGACTATCATCCTATACTGAAATCACGAACAACTCACTTTCCTGGCTGTGACTCGTCTTTCAAGGCATACCACTCAGGTCTGAAGGACTCATACATACACCACAGGGCCCAGTCAAAGGCATCTGCAGCAGGCACATAACGTGTGACTGTCAAGTCATCGAATTGGACGTTGTCAAACACCGGTGTCAACACCAACGTGCGGTCCTCCTTTATCCGAGCTAACAGAGGCTCCGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1968996 lncRNA upstream 25354 23522449 ~ 23522762 (+) True G1718610
TU1968994 lncRNA upstream 26329 23520687 ~ 23521787 (+) True G1718609
TU1968988 lncRNA upstream 34117 23513752 ~ 23513999 (+) True G1718603
TU1968982 lncRNA upstream 58565 23489342 ~ 23489551 (+) True G1718597
TU1968974 lncRNA upstream 61740 23486099 ~ 23486376 (+) True G1718589
TU1969075 lncRNA downstream 21583 23570623 ~ 23572286 (+) True G1718685
TU1969079 lncRNA downstream 29317 23578357 ~ 23578624 (+) True G1718689
TU1969081 lncRNA downstream 31849 23580889 ~ 23581147 (+) True G1718691
TU1969086 lncRNA downstream 35942 23584982 ~ 23585328 (+) True G1718696
TU1969092 lncRNA downstream 44015 23593055 ~ 23593510 (+) True G1718701
XM_021577209.2 mRNA upstream 37558 23505048 ~ 23510558 (+) True ada2b
XM_021577210.2 mRNA upstream 43305 23501124 ~ 23504811 (+) True LOC110500067
XM_036957346.1 mRNA upstream 124378 23405462 ~ 23423738 (+) False LOC110500058
XM_036957345.1 mRNA upstream 150380 23393527 ~ 23397736 (+) True LOC110500056
XM_036958469.1 mRNA upstream 194347 23341188 ~ 23353769 (+) True LOC110500052
XM_021577217.2 mRNA downstream 65098 23614138 ~ 23622406 (+) False LOC110500071
XM_021577219.2 mRNA downstream 92350 23641390 ~ 23644750 (+) True LOC110500073
XR_005038558.1 mRNA downstream 159422 23708462 ~ 23709161 (+) False LOC118942913
XM_021577228.2 mRNA downstream 161229 23710269 ~ 23732051 (+) False LOC110500077
XM_036957359.1 mRNA downstream 161246 23710286 ~ 23732051 (+) False LOC110500077
TU1968049 other upstream 291304 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 291304 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 447307 23099015 ~ 23100809 (+) False ruxf
TU1967920 other upstream 447485 23099015 ~ 23100631 (+) True ruxf
TU1967841 other upstream 525352 23014806 ~ 23022764 (+) True LOC110500038
TU1969665 other downstream 524365 24073405 ~ 24074448 (+) True G1719225
TU1969708 other downstream 586724 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 728791 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 767598 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 2062776 25611816 ~ 25612268 (+) True G1720836

Expression Profile