RNA id: TU1969075


Basic Information

Item Value
RNA id TU1969075
length 1664
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1718685
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23570623 ~ 23572286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATTACATGTTCATAAATGTTTTCGTATCAATGTACAGTTCATCAAGTGGAATGACCTCAATTCAATTATTTCCAAATAGACCACAATGGCTGATTGTGAAATAAGTTGGTTGAAATGAATGCACACACTTTCTTTTTGTTGTAGTACAGTACAATAAAATCAGCAATGTCCTGGCATGCTATTATACTGACTTATAGAAAGATAGCAAAACAGTTACTCAGTACATCACACAATATCATCATTAAGCGCACCAGCTATTGTCTGTGGGGCTCTCTTAAATAACAATGTTCAGCGAGCACTGAAAAATAAACAAGAAAACCATTCAAATTACAATTGAAACATggtaaaaatatacatatttcatTTAAGACATTGCCAATGTGACCTGGTTATGTATACATACAGTGCTTGAGATATAAACTCGGCCAAAAAGAAACatccttttttcaggaccctgtctttcaaagattattcgtaaaaatccaaataacttcacagatcttcattgtaaagggtttaaacactgtttcccatgcttgtcaaattaaccataaacaattaatgaacatgcacctgtggaacggtcgttaagacacgaacagcttactgacggtaggcaattaaggttacGGAATTAAGGAAAACTTAAAgacactgaagaggcctttctactgactctgaaaaacaccaaagaaaagatgcccagggtccctgctcatctgtgtgaacatgccttagcTGTGCCTCAGCTGCATGCCTCagctgcgtgaacgtgccttgcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatatccgtactgtgagacgcctaagacagcgctacagggagacaggacggacagttgatcgtccttgcagtggcagaccacgtgtaaccatgttcatacaaatattcacacatgttaagtttgctgaaaataaacgtagttgacagtgagaggacatttattttttgctgagtttattacccCAAATATTTCATATACAGGTCACACCTTAAACCAATAAGTTAATCATAACAAAAGTGTAAAATGTACATTAAATGCTGTACTGTTCAAAAGGAAATATATTCTGAACATGGTACAAATATAAAAACAGTTTTAAAATGACTTTCTCTAACTGGAGCATGTGAAAAGCATCAGCACCAGTTTCCTTAAAAAGAAGCTTACAGAGAACAAAAAAAAGCTACCTTCCTTCATTTGGCCCAGGTTTTATTGAAGAAAGCTGAACATTGCAGCAAATGATCTTTTTGTCAAGGTAAGAGAAGTTAATCAAAATAGATGGAACTGCTTTTTTGAGGAATTAAGAGCtttaaaaaaatgacatttgtgtgaggaataaaaaaaaaacagacgaTGCATTGGATGCTGAAAGGCACATTTGAATAACAAGTGGTGAGGATCACTGGTCAGAATATTCCTGTTTTGTAGACACCGGGAAACTTTGTATATGACAATGACGTATGAAGAATATCAAACCATCCAATCCCAGTCCAAGCTTGGCATTTCAGGTCAGGAAAATAACATTCCTTTACATTGACCACTTGAGGGCCCTGTTTTTGAGCTAACAGTTGTCAGCTCGACAGCCGCCCTTTCACTGACTTACAGGTGATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1968997 lncRNA upstream 16033 23523033 ~ 23554590 (+) True G1718611
TU1969016 lncRNA upstream 21583 23548116 ~ 23549040 (+) True G1718629
TU1968996 lncRNA upstream 47861 23522449 ~ 23522762 (+) True G1718610
TU1968994 lncRNA upstream 48836 23520687 ~ 23521787 (+) True G1718609
TU1968988 lncRNA upstream 56624 23513752 ~ 23513999 (+) True G1718603
TU1969079 lncRNA downstream 6071 23578357 ~ 23578624 (+) True G1718689
TU1969081 lncRNA downstream 8603 23580889 ~ 23581147 (+) True G1718691
TU1969086 lncRNA downstream 12696 23584982 ~ 23585328 (+) True G1718696
TU1969092 lncRNA downstream 20769 23593055 ~ 23593510 (+) True G1718701
TU1969095 lncRNA downstream 25698 23597984 ~ 23598243 (+) True G1718704
XM_021577209.2 mRNA upstream 60065 23505048 ~ 23510558 (+) True ada2b
XM_021577210.2 mRNA upstream 65812 23501124 ~ 23504811 (+) True LOC110500067
XM_036957346.1 mRNA upstream 146885 23405462 ~ 23423738 (+) False LOC110500058
XM_036957345.1 mRNA upstream 172887 23393527 ~ 23397736 (+) True LOC110500056
XM_036958469.1 mRNA upstream 216854 23341188 ~ 23353769 (+) True LOC110500052
XM_021577217.2 mRNA downstream 41852 23614138 ~ 23622406 (+) False LOC110500071
XM_021577219.2 mRNA downstream 69104 23641390 ~ 23644750 (+) True LOC110500073
XR_005038558.1 mRNA downstream 136176 23708462 ~ 23709161 (+) False LOC118942913
XM_021577228.2 mRNA downstream 137983 23710269 ~ 23732051 (+) False LOC110500077
XM_036957359.1 mRNA downstream 138000 23710286 ~ 23732051 (+) False LOC110500077
TU1968049 other upstream 313811 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 313811 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 469814 23099015 ~ 23100809 (+) False ruxf
TU1967920 other upstream 469992 23099015 ~ 23100631 (+) True ruxf
TU1967841 other upstream 547859 23014806 ~ 23022764 (+) True LOC110500038
TU1969665 other downstream 501119 24073405 ~ 24074448 (+) True G1719225
TU1969708 other downstream 563478 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 705545 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 744352 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 2039530 25611816 ~ 25612268 (+) True G1720836

Expression Profile