RNA id: TU1969372



Basic Information


Item Value
RNA id TU1969372
length 278
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1718965
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23844811 ~ 23845088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtatgggtattaggtagatgtagtggtgtagggttaTTAGGTAGATATAGTGGTGTAGGGGTATTATGtagatgtagtggtgtaggggaTTTAGGTAGAGGTAGTGGTGTATCGGTATTAGGTAGATATATtggtgtaggggtattaggtagatgtagtggtgtaggggtattaggtagatgtagtggtgTACAGGTATTAGGATAGatgtaggggtattaggtagatgtagtggtgtaggggtattaggtagatgtagtggtgtaggggtatTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1969371 lncRNA upstream 42 23844411 ~ 23844769 (+) True G1718964
TU1969370 lncRNA upstream 536 23843958 ~ 23844275 (+) True G1718963
TU1969321 lncRNA upstream 35304 23809211 ~ 23809507 (+) True G1718914
TU1969149 lncRNA upstream 53496 23733069 ~ 23791315 (+) True LOC110500079
TU1969176 lncRNA upstream 135663 23708468 ~ 23709148 (+) True LOC118942913
TU1969373 lncRNA downstream 2045 23847133 ~ 23847769 (+) True G1718966
TU1969410 lncRNA downstream 37076 23882164 ~ 23882378 (+) True G1718998
TU1969522 lncRNA downstream 94279 23939367 ~ 23939686 (+) True G1719102
TU1969532 lncRNA downstream 102608 23947696 ~ 23952073 (+) True G1719112
TU1969537 lncRNA downstream 107487 23952575 ~ 23952897 (+) True G1719117
XM_021577232.2 mRNA upstream 53504 23733010 ~ 23791307 (+) False LOC110500079
XM_021577225.2 mRNA upstream 112759 23711583 ~ 23732052 (+) False LOC110500077
XR_005038743.1 mRNA downstream 51880 23896968 ~ 23903687 (+) True LOC118943007
XM_036957362.1 mRNA downstream 64917 23910005 ~ 23936559 (+) True LOC110500082
XM_021577240.2 mRNA downstream 131585 23976673 ~ 23985903 (+) False rpap3
XM_021577239.2 mRNA downstream 135397 23980485 ~ 23985903 (+) False rpap3
XM_021577241.2 mRNA downstream 136312 23981400 ~ 23985903 (+) False rpap3
TU1968049 other upstream 587999 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 587999 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 744002 23099015 ~ 23100809 (+) False ruxf
TU1967920 other upstream 744180 23099015 ~ 23100631 (+) True ruxf
TU1967841 other upstream 822047 23014806 ~ 23022764 (+) True LOC110500038
TU1969665 other downstream 228317 24073405 ~ 24074448 (+) True G1719225
TU1969708 other downstream 290676 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 432743 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 471550 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 1766728 25611816 ~ 25612268 (+) True G1720836

Expression Profile