RNA id: TU1969707


Basic Information

Item Value
RNA id TU1969707
length 1555
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1719267
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24134085 ~ 24135639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTAGGCCTTCCTCAGATTACAGAAGTTCCCGGAATGAAGATTTTTAAGTGCAAGGCTCCCATCTACTTTGCCAACATTGACTACTTCAAAGAGCGATTGAGAGCCACGGTGATTGAACTCGTTGTATTTCCCCTTGGCATTGTATAGATTGGGGATAGGCCTTATCATTCTACAAGCAGGCAAGATGAAAGTTTGTTGTGCGTTTGACCTTTGACATGCAGGTGGGGTTTGACTCTGTCAGAGTGTTCAAGAAGAGGAATAAGGCCCTCAAGAAGATTCAAAAACTCATAAAGAAAGGGAAACTGAGGGCGACAGAGGTACGATACAGTCTGATTTATTGATAACATTCATCTGTTCGGCTCAGAATCTTTTGAAACAGGGAATTTCCATCTTCAGTCTCCTTTCAATCCTTTACACTCATTTAGTTTTGCTCTGTAATGTGAGCTCCAGTACCTGGTAACCAGTTAGGATTTTATGATTGGTTGTGGAGCTACATTTGACTTGATTGGTTGAACCTCCGTTCCCCCAGACCGGGGAGGTGGTATCCGAGGTTTCCCTGGGTGTCGACAACAAGGGTTTCGAGAGCGAGCGGGACAGTGGGCGGGAGCCCGGGCAGGTGGAGGTCCATGTGGATTGGgccatggagctgccagtcagggTGTCGGTACCTAAGGTCCAGCTCCAAAGCCTGGTTGGACTATTCAGCCGTGTCCTTCCTAGACGTGGTGGCCGTCAAGTCCCTCAGACAGGTGGGGCGGACTCTACTACTGGTACCATCCATATGATATTCTATAGAATAGATTTAACAGACTACAGTTCATTCAAAGACAAAAGATCCCTTACTACAGTGTTATAGTGAGTCATCTTTCTGACATAATTTGAACTAGTGATCTACTGTATGACGAGGCATCATGTCACAGCTTATACACAGTGCCCCAGCTCATGACAATGCACAAATGACACAACTAAAGGAACAAATACCCTCTGTATGGTTCAATGGAGGTCGATGACGttgaagatgagggaggatgatttttttttttatgaacatggccttattactatcacagcatattggatgattgtcattcatattccattcacccagctcaatgtaacagcgataggtttaggctactacatgatacaaaACGTTTACCTATACCCATCAGGACAGTTTACAACACTGATCGAGAGAAAAATGAgaataatcaaggtgacagacaatgacacattcaatactgcatCGCAAAATCTTGCATGCATCTAGCTGatttagggtgtaatcattagtcaaaCAGTTGCAAATTAGATATTCTTTTGGACAAATGTAGGTATGTTTATCCCTCTTTCGTTACGTTTGCTTCCGTTTACGACACGTTTTTTTCAACAGAATGGGTGGAATGAATACagccctgatcacacgcaaaaacagttcactttcatagcagtcacatacaaacagcatgatcattttgcCAGTTGTATAATTCCTTTTCGCATCTacacgctctctttctctcaccttttcccttcgcttgtggacatCAGtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1969706 lncRNA upstream 446 24133358 ~ 24133639 (+) True G1719266
TU1969701 lncRNA upstream 12432 24121357 ~ 24121653 (+) True G1719261
TU1969699 lncRNA upstream 13687 24120030 ~ 24120398 (+) True G1719259
TU1969637 lncRNA upstream 74129 24038935 ~ 24059956 (+) True G1719197
TU1969634 lncRNA upstream 96380 24037456 ~ 24037705 (+) True G1719194
TU1969709 lncRNA downstream 1627 24137266 ~ 24137614 (+) True G1719269
TU1969724 lncRNA downstream 29003 24164642 ~ 24164864 (+) True G1719277
TU1969726 lncRNA downstream 29424 24165063 ~ 24165387 (+) True G1719278
TU1969731 lncRNA downstream 35178 24170817 ~ 24171023 (+) True G1719281
TU1969953 lncRNA downstream 133727 24269366 ~ 24269623 (+) True G1719463
XM_021577240.2 mRNA upstream 148182 23976673 ~ 23985903 (+) False rpap3
XM_021577239.2 mRNA upstream 148182 23980485 ~ 23985903 (+) False rpap3
XM_021577241.2 mRNA upstream 148182 23981400 ~ 23985903 (+) False rpap3
XM_021577242.2 mRNA upstream 148182 23981463 ~ 23985903 (+) True rpap3
XM_036957362.1 mRNA upstream 197526 23910005 ~ 23936559 (+) True LOC110500082
XM_021577256.2 mRNA downstream 11404 24147043 ~ 24157840 (+) True LOC110500093
XM_021577261.2 mRNA downstream 40540 24176179 ~ 24190708 (+) False LOC110500095
XM_021577258.2 mRNA downstream 40541 24176180 ~ 24190708 (+) False LOC110500095
XM_036957380.1 mRNA downstream 40556 24176195 ~ 24190708 (+) True LOC110500095
XM_021577262.2 mRNA downstream 142158 24277797 ~ 24294858 (+) False adm2a
TU1969665 other upstream 59637 24073405 ~ 24074448 (+) True G1719225
TU1968049 other upstream 877273 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 877273 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 1033276 23099015 ~ 23100809 (+) False ruxf
TU1969708 other downstream 125 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 142192 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 180999 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 1476177 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 1500696 25636335 ~ 25636589 (+) True G1720853

Expression Profile