RNA id: TU1970107



Basic Information


Item Value
RNA id TU1970107
length 271
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1719612
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24433044 ~ 24433314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACGGATCACAGACCTTACTGGAGCTCCTCATTACAGACAACTGCGTGGCcagcaaatctaccattccagtgtttatttttttcatatttttttttaacttgctATATTGTGTTTactttgcctttacctcccttatctcacctcatttgctcacattgtatatagactaatttttctactgtattattgactgtatgtttgttttactccatgtgtaactgtgttgttgttcatgttCATGCCACTCtctgtcgctttctctctctcccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1970091 lncRNA upstream 14807 24418011 ~ 24418237 (+) True G1719596
TU1970013 lncRNA upstream 18363 24413866 ~ 24414681 (+) True asb13a.2
TU1970016 lncRNA upstream 20632 24411510 ~ 24412412 (+) True G1719524
TU1970012 lncRNA upstream 24214 24408262 ~ 24408830 (+) True G1719520
TU1970021 lncRNA upstream 29773 24403061 ~ 24403271 (+) True G1719529
TU1970110 lncRNA downstream 2330 24435644 ~ 24436052 (+) True G1719615
TU1970128 lncRNA downstream 22012 24455326 ~ 24455621 (+) True G1719632
TU1970130 lncRNA downstream 24333 24457647 ~ 24458033 (+) True G1719634
TU1970140 lncRNA downstream 39735 24473049 ~ 24473359 (+) True G1719644
TU1970144 lncRNA downstream 52349 24485663 ~ 24486295 (+) True G1719647
XM_021577274.2 mRNA upstream 18865 24405619 ~ 24414179 (+) False asb13a.2
XM_021577275.2 mRNA upstream 18921 24405619 ~ 24414123 (+) False asb13a.2
XM_021577273.2 mRNA upstream 21973 24405619 ~ 24411071 (+) False asb13a.2
XM_021577272.2 mRNA upstream 27506 24401158 ~ 24405538 (+) True asb13a.1
XM_021577270.2 mRNA upstream 32034 24389312 ~ 24401010 (+) True LOC110500103
XM_021577280.2 mRNA downstream 142494 24575808 ~ 24603395 (+) False mkln1
XM_021577281.2 mRNA downstream 142494 24575808 ~ 24603395 (+) False mkln1
XM_021577282.2 mRNA downstream 142494 24575808 ~ 24603395 (+) True mkln1
LOC110500922 mRNA downstream 201363 24634677 ~ 24637555 (+) True LOC110500922
XM_036956500.1 mRNA downstream 219913 24653227 ~ 24657324 (+) True LOC110501038
TU1969980 other upstream 115506 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 138247 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 296721 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 358596 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 1176232 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 1178502 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 1203021 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 1604988 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 1896460 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 2388333 26821647 ~ 26821935 (+) True G1722079

Expression Profile