RNA id: TU1970357


Basic Information

Item Value
RNA id TU1970357
length 2223
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1719826
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24875539 ~ 24935910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGTCACATGCAAAAAAAGTCCAAAAAAGGTCAAGCTAAGTTCAAAAGGTCAGTAGGCGGAGACCAGGTTATGATCAGGTGAGCTCAGAAAAGACATCAGAAAACAATGACGGGACGATGAGACTTTTTTTGTATAATTTTGTTTTTGGACGCCAGGCCACAGAGACATGCTAGGCAAACGATGAGCTAACAGGCATGGAGATGGGTTCTATAGGAAGaaaacaggggagaggagagagttacacACAGGACAGAGAGCCAGGGCACCACATTACTACAGCATTAAAATCaggggaacaacaacaacaaacaacaaaacaacaatgcAAACCACCAGGCCATAATGGCAACACCACTCACTACACAATTGGCAATTTTTTTTATCTatcattatttcattttttttgtacaAAAATGATTTACAATTTGGATTAATACTAACAGACAAACTAACAGAcaaacacactatcacacactcatacacagagCACCCAAAGTTATATCCATCAGTACCACATGCTTCTAGAGAGCAAGGAGGATGGATTGTAATTTGGGAGAAACTGTTTAAAAGTTTTTGTACAGTACAAACGAACGAAACATACACGTGAACAAAAAAACGAAACGCAAGGAAAGGTTGAAATTTGACAGgtgaagtacagagagagagagagagagagagagagaggggggtgtgtgACAGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGGGAGGTGAGTGACAGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGggagcacagacagagagagaggtgtgtgacaGTGAAGggagcacagacagagagaggtgtgtgacaGTGTAGggagcacagacagagagaggtgtgtgacaGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGGGAGCAGAGGCAGAGCGAGGTGTGAACCTGGCTCTGTTCTAGAGAATTCTACAGTTCCGAATTTCAGAAGACCACTCAACAAGGTTCTATTCTAACGGATTCTGTTCTTTGTAGGAGTCCAATAACTTAACGATAGGcaataaataaaatcattttttttctgaggcagTAAAAATTTTGtataaaaatagaactgctttttttacaaataaaatgtacAGGCCTGTGGCTTTCGCTACTTTGAATTTCTTTTTTTTATCTCTCAAGAAACATCAAGTATTTTCAGTTAACTTCCCACCCATACATTTTTTATCTTATAGCCTTCATCAGATTCTGGATGTTACTTTAAAAATGTTCTACACAATATCCCTTTCAACAAAGACCAATGTGATCTGACCCAGAAAATCATAAGTTTGCTAACATTGTTTTAGTGTGAAATAAACATTCTCCACATTAAGAAATGAAAATGACTGTCCTGATAATAATGAAATAGAGGAGTATATGGGATGCTGTCGTTGACTGACTAACAGGTGAGAGGCCACTAAGTTTTGTTTTTGAACCCTTTGTTCCATGGTGTCTGTCAGCAGGCATCAGGGGTCAGAGAAGCAGCGGTGGTTGGCCCGGGAAACCAACACCAGGAGGTCAAGGGTCATGTGCATATCGGTGCGTGGTGTGTCAGAAATGAACCCTTTATCTCAGCATTTTATCAGGCCTCAGGTTCACAAAGAGAAAAAACAAAATCATATAGGTTCTGGGTTTTTTTCTTACTCTGTTTTTGGAGTAACGAAATTCTTCTCATAACAGTATATAAATAATCACGTAGAaaattaaatatgttttacaaCTGAAAAAGCTACCGATGAtagctacttttttttttttaaagtggtaCAAAATAAAGGTGGTAATGGAAGCATTAATGTGaaagataatacaaaaaaatgataatagtaataataaataatactGCTGAACACAAAagctaaaaaaacaaaacaaataaaactCAAGGAGAAAGTAGTGtctccctctggtggtcaaatgttgtctcccccccccccctccacttccCTCCCCCAGTCCCTGTGTAGAGGTCGTGGCTCGTATGGGGACTTACCCTAGCAGTGGTAACATGGGAGCAGATAGGCCCTAGTGCTAAGATCAGTATGGTTTGCTGTCGTTCTTGGAGCGCTTGAGCTGCACCTTCAGCCTCTTCATGCCGATCTGGAAGCCATTCATGGCCTGGATGGCTGCCTGCGCCGACACGGGATTGTCATAGCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1970402 lncRNA upstream 46847 24832400 ~ 24833158 (+) True G1719862
TU1970336 lncRNA upstream 123689 24755341 ~ 24756316 (+) True G1719811
TU1970274 lncRNA upstream 135125 24742719 ~ 24744880 (+) False LOC110500114
TU1970436 lncRNA downstream 686 24882944 ~ 24883900 (+) True G1719893
TU1970438 lncRNA downstream 8635 24890893 ~ 24896663 (+) True G1719895
TU1970459 lncRNA downstream 36719 24918977 ~ 24924572 (+) True G1719913
TU1970521 lncRNA downstream 142944 25025202 ~ 25025696 (+) True G1719973
TU1970528 lncRNA downstream 150360 25032618 ~ 25032868 (+) True G1719979
XM_021577294.2 mRNA upstream 88438 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA upstream 88438 24787487 ~ 24791567 (+) True LOC110500118
XM_021577289.2 mRNA upstream 135121 24659831 ~ 24744884 (+) False LOC110500114
XM_021577290.2 mRNA upstream 139838 24659827 ~ 24740167 (+) False LOC110500114
XR_002470065.2 mRNA downstream 886628 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 989563 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 1009615 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 1009615 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 1049332 25931590 ~ 25977279 (+) False sfmbt2
TU1969980 other upstream 562467 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 585208 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 743682 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 805557 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 1623193 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 729558 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 754077 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 1156044 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 1447516 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 1939389 26821647 ~ 26821935 (+) True G1722079

Expression Profile