RNA id: TU1970959



Basic Information


Item Value
RNA id TU1970959
length 244
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G1720358
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25105873 ~ 25106116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caggaacaatggtggccctcttgaagcatgtgggaacagcagactgggataaggattgattgaatatgtctgtaaacacaccagccagctggtctgcgcatgctctgagggcgcggctggggatgccgtctgggcctgcagccttgcgagggttaacacgtttaaatgttttcctcacctcagctgcagtgaaggagagtccgcatgttttggttgcgggccgtgtcagtggcactgtattgtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1970957 lncRNA upstream 742 25104335 ~ 25105131 (+) True G1720356
TU1970573 lncRNA upstream 4444 25101191 ~ 25101429 (+) True G1720024
TU1970571 lncRNA upstream 5713 25099875 ~ 25100160 (+) True G1720022
TU1970570 lncRNA upstream 6832 25098822 ~ 25099041 (+) True G1720021
TU1970567 lncRNA upstream 11153 25094515 ~ 25094720 (+) True G1720018
TU1970978 lncRNA downstream 17072 25123188 ~ 25123425 (+) True G1720377
TU1970985 lncRNA downstream 21607 25127723 ~ 25127935 (+) True G1720384
TU1971039 lncRNA downstream 93655 25199771 ~ 25200111 (+) True G1720437
TU1971070 lncRNA downstream 134992 25241108 ~ 25241320 (+) True G1720464
TU1971090 lncRNA downstream 141168 25247284 ~ 25247575 (+) True G1720484
XM_021577294.2 mRNA upstream 314306 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA upstream 314306 24787487 ~ 24791567 (+) True LOC110500118
XM_021577289.2 mRNA upstream 360989 24659831 ~ 24744884 (+) False LOC110500114
XM_021577290.2 mRNA upstream 365706 24659827 ~ 24740167 (+) False LOC110500114
XR_002470065.2 mRNA downstream 662770 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 765705 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 785757 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 785757 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 825474 25931590 ~ 25977279 (+) False sfmbt2
TU1969980 other upstream 788335 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 811076 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 969550 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 1031425 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 1849061 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 505700 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 530219 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 932186 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 1223658 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 1715531 26821647 ~ 26821935 (+) True G1722079

Expression Profile