RNA id: TU1971410



Basic Information


Item Value
RNA id TU1971410
length 647
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G1720766
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25501513 ~ 25517265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggtgatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaacaaTGAGGAGGGGacactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactacataatgttgttgggtctgtaaccatgaggaggggatattatataatgttgttgggtctgttacCATGAGGaagagatactatataatgttattgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgttaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1971201 lncRNA upstream 47036 25374552 ~ 25454477 (+) True G1720586
TU1971227 lncRNA upstream 88437 25409457 ~ 25413076 (+) True G1720607
TU1971206 lncRNA upstream 119297 25380471 ~ 25382216 (+) True G1720589
TU1971090 lncRNA upstream 253938 25247284 ~ 25247575 (+) True G1720484
TU1971070 lncRNA upstream 260193 25241108 ~ 25241320 (+) True G1720464
TU1971495 lncRNA downstream 98142 25613899 ~ 25614210 (+) True G1720838
TU1971519 lncRNA downstream 129512 25645269 ~ 25645821 (+) True G1720857
TU1971522 lncRNA downstream 130685 25646442 ~ 25654842 (+) True G1720860
TU1971533 lncRNA downstream 147048 25662805 ~ 25664431 (+) True G1720869
TU1971558 lncRNA downstream 174868 25690625 ~ 25691013 (+) True G1720892
XM_021577294.2 mRNA upstream 709946 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA upstream 709946 24787487 ~ 24791567 (+) True LOC110500118
XM_021577289.2 mRNA upstream 756629 24659831 ~ 24744884 (+) False LOC110500114
XM_021577290.2 mRNA upstream 761346 24659827 ~ 24740167 (+) False LOC110500114
XR_002470065.2 mRNA downstream 253129 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 356064 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 376116 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 376116 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 415833 25931590 ~ 25977279 (+) False sfmbt2
TU1969980 other upstream 1183975 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1206716 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 1365190 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 1427065 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 2244701 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 96059 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 120578 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 522545 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 814017 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 1305890 26821647 ~ 26821935 (+) True G1722079

Expression Profile