RNA id: TU1971493



Basic Information


Item Value
RNA id TU1971493
length 453
RNA type TUCP
GC content 0.46
exon number 1
gene id G1720836
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25611816 ~ 25612268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccataatgaccatcgttatgtttggaggaaaaaggaggaggcttgcaagccgaagaacaccatcccaacagtgaagcacgggggtggcagcatcatgttgtgggggtgttttgctgtaggagggactggtgcacttcacaaaatagatagcttcatgagggaggaaaattatgtggatttattgaaccaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatgaacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattgaagtggccatcacaaagccctgacctcaatcttatagcaaatttgtgggcagaactgaaaaaccgtgtgcaagcaaggaggcctacaaacctgactcagttacacctgctctgtcaggaggattgggccaaaattca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1971403 lncRNA upstream 94551 25514745 ~ 25517265 (+) False G1720766
TU1971410 lncRNA upstream 96059 25501513 ~ 25515757 (+) False G1720766
TU1971404 lncRNA upstream 96059 25514745 ~ 25515757 (+) False G1720766
TU1971408 lncRNA upstream 96059 25514745 ~ 25515757 (+) True G1720766
TU1971201 lncRNA upstream 157339 25374552 ~ 25454477 (+) True G1720586
TU1971495 lncRNA downstream 1631 25613899 ~ 25614210 (+) True G1720838
TU1971519 lncRNA downstream 33001 25645269 ~ 25645821 (+) True G1720857
TU1971522 lncRNA downstream 34174 25646442 ~ 25654842 (+) True G1720860
TU1971533 lncRNA downstream 50537 25662805 ~ 25664431 (+) True G1720869
TU1971558 lncRNA downstream 78357 25690625 ~ 25691013 (+) True G1720892
XM_021577294.2 mRNA upstream 820249 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA upstream 820249 24787487 ~ 24791567 (+) True LOC110500118
XM_021577289.2 mRNA upstream 866932 24659831 ~ 24744884 (+) False LOC110500114
XM_021577290.2 mRNA upstream 871649 24659827 ~ 24740167 (+) False LOC110500114
XM_036957398.1 mRNA upstream 888131 24720968 ~ 24723685 (+) True LOC110500113
XR_002470065.2 mRNA downstream 156618 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 259553 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 279605 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 279605 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 319322 25931590 ~ 25977279 (+) False sfmbt2
TU1969980 other upstream 1294278 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1317019 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 1475493 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 1537368 24073405 ~ 24074448 (+) True G1719225
TU1968049 other upstream 2355004 23256126 ~ 23256812 (+) False G1717785
TU1971515 other downstream 24067 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 426034 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 717506 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 1209379 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2710252 28322520 ~ 28324617 (+) True LOC110501048

Expression Profile