RNA id: TU1971623



Basic Information


Item Value
RNA id TU1971623
length 212
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1720951
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25755000 ~ 25755211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacatattctttatccccttacacttgtgtctataaggtagtagttttggaattgttagctagattacttgttggttattactgcattgtcggaactagaagcacaagcatttggctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatgtgatttgatttgtttgcATAACATGTCTGTTTTTTACAAATTAGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1971602 lncRNA upstream 18018 25736772 ~ 25736982 (+) True G1720934
TU1971600 lncRNA upstream 19004 25735784 ~ 25735996 (+) True G1720932
TU1971577 lncRNA upstream 25402 25708209 ~ 25729598 (+) True G1720911
TU1971574 lncRNA upstream 49493 25705281 ~ 25705507 (+) True G1720908
TU1971565 lncRNA upstream 57462 25697327 ~ 25697538 (+) True G1720899
TU1971625 lncRNA downstream 8579 25763790 ~ 25765550 (+) True G1720953
TU1971682 lncRNA downstream 81045 25836256 ~ 25836466 (+) True G1721002
TU1971684 lncRNA downstream 91392 25846603 ~ 25846830 (+) True G1721004
TU1971685 lncRNA downstream 92922 25848133 ~ 25848463 (+) True G1721005
TU1971707 lncRNA downstream 104017 25859228 ~ 25859428 (+) True G1721016
XM_021577294.2 mRNA upstream 963433 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA upstream 963433 24787487 ~ 24791567 (+) True LOC110500118
XM_021577289.2 mRNA upstream 1010116 24659831 ~ 24744884 (+) False LOC110500114
XM_021577290.2 mRNA upstream 1014833 24659827 ~ 24740167 (+) False LOC110500114
XR_002470065.2 mRNA downstream 13675 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 116610 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 136662 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 136662 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 176379 25931590 ~ 25977279 (+) False sfmbt2
TU1971515 other upstream 118411 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 142732 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1437462 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1460203 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 1618677 24135764 ~ 24136323 (+) True G1719268
TU1971779 other downstream 283091 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 574563 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 1066436 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2567309 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2586290 28341501 ~ 28343734 (+) False LOC110500183

Expression Profile