RNA id: TCONS_00006000


Basic Information

Item Value
RNA id TCONS_00006000
length 299
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id XLOC_002606
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8841698 ~ 8858568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGCATTTGGGATAAATTGGCTGttgatttgtgttctgaaaatgaaTAACAGTTATGTGTGTTTGGAATTACATATTGTTTTCATGCAGATCTCTGACTCACAGCAATTCCAAAGCGAATGATGCCGTCTCTGTCAAGTTTCTGAATGACTTCTTGACCTCTATACCCATCAGCAGATTCTCCATCTGTCACCACTACCAGCACCTTAGTGGCACCTGGACGCCCACCGTTTTCTGACATTCGCTGCAACCCATCTGGAATACCTGAGAAACACTGCAAGCATGAAGATGCTTTGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005998 lncRNA downstream 184021 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00005997 lncRNA downstream 220155 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00004846 lncRNA downstream 220425 8618849 ~ 8621273 (-) True XLOC_002602
TCONS_00004840 lncRNA downstream 571865 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00004828 lncRNA downstream 794935 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00006001 lncRNA upstream 286940 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00006002 lncRNA upstream 331529 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00004863 lncRNA upstream 406105 9264673 ~ 9269249 (-) False XLOC_002614
TCONS_00004864 lncRNA upstream 406105 9264673 ~ 9269711 (-) True XLOC_002614
TCONS_00005750 lncRNA upstream 407485 9266053 ~ 9267711 (-) True XLOC_002615
TCONS_00004847 mRNA downstream 168878 8660654 ~ 8672820 (-) True XLOC_002604
TCONS_00004845 mRNA downstream 406882 8416117 ~ 8434816 (-) True XLOC_002601
TCONS_00004844 mRNA downstream 483302 8298984 ~ 8358396 (-) True XLOC_002600
TCONS_00004843 mRNA downstream 546356 8274075 ~ 8295342 (-) True XLOC_002599
TCONS_00004842 mRNA downstream 546733 8266371 ~ 8294965 (-) False XLOC_002599
TCONS_00004849 mRNA upstream 88660 8947228 ~ 8956742 (-) False XLOC_002607
TCONS_00004850 mRNA upstream 88660 8947228 ~ 8957480 (-) False XLOC_002607
TCONS_00004851 mRNA upstream 88662 8947230 ~ 8956779 (-) False XLOC_002607
TCONS_00004852 mRNA upstream 88780 8947348 ~ 8955413 (-) False XLOC_002607
TCONS_00004853 mRNA upstream 96719 8955287 ~ 8956973 (-) True XLOC_002607
TCONS_00004848 other downstream 163870 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004819 other downstream 881860 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 949014 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 949832 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 1329575 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004855 other upstream 158153 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 178790 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 282997 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 676214 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004879 other upstream 1460740 10319308 ~ 10332427 (-) False XLOC_002623