RNA id: TU1971691


Basic Information

Item Value
RNA id TU1971691
length 2846
lncRNA type antisense_over
GC content 0.50
exon number 9
gene id G1721010
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25876916 ~ 25884807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGTACTGGTTGTTGTTGGGGATATAGAGGCCCAGGAAGTCCACGTGGGTTGGGTGTTTCTTCCACACACGATGTAGCAGCACCATCACAGTGATCTTGTCATCCACCGTCACCATCACCTTGGAGTCCTTCACTATGGAAACCTTCACCCGGTCCTGGGTGATGTCGGCCGTGGCTCCCCAGGTGAAGGAGTGGTTGTTCCTGCCGTGAGTCAGGTCGATACGGTCGGTGCTGACTGACACTCTGATGCCGTCAGGCTGGTAGAACACTGATATGGTGCCAAAGTACGTGTtcaccttctccttctccttctcctccaccccGACCCTCTTAGAGCCAACCAACTGGCCATTCACCACCACGCCTGCACCAGGGTCTGACACCAGATTGAGGATGTGTCCAGGCTCTGAGTCGATGTTGAAGCAGATGTCCATGTTGTTTTTAGGCAGGTGGACGATGAAGTGAGGGTCGTTCTCCACTATGGTGATGTGATCTGGTAGGGGCCTCTCGGCGTGGCTAGGGGGGGCAGGGGTGGTCCTCTGGACCCAGGGGGGGATGCTGTGAACCATCTGCACTGGAGTCCTTCCTCCGAGAGCAGCCATACCAGatcctcctacacacacacacacacacacacaccaagtttgGGAAAGCTTTAGTCACTCTCTTGCCCTCATGTACATTTACAAGACCCAAAATGGGGGACTCTAGTGATTTTGATCAGGCACCTGCACAGCAGCCCTGTTTGGGGTCATTAGGGGAGTCAGCGAGCAACCTCTCCTTGCCCTCCTCACTCTCCACCAGTAGGGCAGTGAGGGGCGTGACAAACTGGTGCTCCACAGCCAAGGTCAGGATCCTCTGTGTGATCTTCCTCTTGTGACCAGCAGTGGGGGCCAGGGACCTtcgaCCAGTAGCTGGTTGACAGTGATGTAGGCCCACATCTGTCTGGCGAAGCCAGTGAAGGCATGCTGCTGCTGGGCCAGCGCAGCGTCTAGCTCCAGGTAGTCTGCTTCAGTCTGTAGGGACAGGTCCAGACGATcctgggaggaagagggggacagagagagggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcagtggtgtaaagtacttaagcaaaaaatatttttaagtactacttaagtcattttttggggtatctgtactttactatttatgtttgaatacttttacttcactacattcctactaaaagtatgtactttttactccatacattttccctgacacccaaaagtactttttacagtttgaatgcttagcaggacaggaaaatggaaAATTCCcccacttatcaagagaatatccctggtatTCGCTACTCCCTCatatctggtggactcactaaagagacatgttttgtttgttaattatgtctgagtgttggagtttgcccctggctatctggttTGGTTAATATAAGcaatttcaaatgatttatacttttaatttTACTTTGGATACTTAActatttttaaaaccaaatacttttagacttttactccagtaatattttactgggtgactttcactttgacttgagtcattttctttacttttactcaagtatgactttTGGGTACTTATTCCACccctgtgtgtatgagtgtgcatgcgtgcatgtgtatgTATGACTCACAGCGGATGCAGTGGTGAAGCTGTTAAGAGTAGTGGACTCAGAGGGCAGCACCTTCCCAGCCACCACCAGCTCTGAGCCACTGAAGTACTTGTCAAAGTGGTTCTGTGTGACGTCAGAGACAGAGTCCTCTGGGAACTGAACTGTGATCTTCCtcaggagaggagacgagacctGGCTGTAGAACCGCCGTATCTGATCTGAGGCGTCGTGGCTGGTGTAGATCCTCTGGGCCACGCCCCTATTCTCCATGGCGATGCGTTCCAGGAAGTCGTAGTCGACATCGAAGCCGATGCCcaatgagaagagagagaactcCTCCCTCATGACCTTCTTCACATTCTTCTGGATGGCGCTGAGCTTGATCTCTCCGACAGTGGGGTCTCCATCAGACACCAGCATGATCATGGAGACAGAGCGTGGGTCAATCATGCCCTGATTGGACGCCTTCACCAGCATCTGCACCGCCCTCATCAATGCCTCATTGATATTGGTGCctcCGTTGGGTTTGATGTTCTGGATGTATTTCTTGGCCTCAGCCACCTGTATGGTGCTGCCTGGAACCAGCTCCTCACTCCAGCAGCGCACGTTGTGGTTGAAGTCAACTATGCTGAAGTAGTCATCCATGGTCAGGTCATCCAATATGGTCTGCATAGCCTccacagtCTGCTTCATCTTGACTCCCCACATAGATCCACTGACGTCAATGACGAATACAATGTTTTTAGGAAGGGGGGAGAGGTTGGCCGGGGCGAAGAAATGCACAAAATGCCCGTCAGAAACCTAGGAGAAACAGTGAGATAACAGTGACCAATACTTCCTGTATTACATTTCTGTTACAAAGTAAAGTGACACAAAGAGTGTGTTACTGCGTGTGTTTCGGTCAGTGTGTGTACCCACATGTAGTTCCCCGGCATTGCTGTCTCTCAGGACGTCGTATTTGACGGTAAAGATGCCATCGATAGCGCTGGTGGTGCAGTTCTCGCACTTCCTCTGCTGCTGGAGCGAGGGCTTGAACACCACGTGAGCCTTGTCCTTCGAGGAGGTGAGTTTGGCCATGCCGCTGAAATGCTCTCCCAAGGTGTTGAGTGTCTCCACAGAGGCGATGCCGCTGGGCTCATAGATATACACGTCCACCtgcggagagacagggagacggtTCAAATACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971698 lncRNA upstream 8872 25866596 ~ 25868044 (+) True G1721011
TU1971707 lncRNA upstream 17488 25859228 ~ 25859428 (+) True G1721016
TU1971685 lncRNA upstream 28453 25848133 ~ 25848463 (+) True G1721005
TU1971684 lncRNA upstream 30086 25846603 ~ 25846830 (+) True G1721004
TU1971682 lncRNA upstream 40450 25836256 ~ 25836466 (+) True G1721002
TU1971745 lncRNA downstream 89755 25974562 ~ 25975664 (+) True G1721050
TU1971783 lncRNA downstream 157101 26041908 ~ 26043103 (+) True G1721087
TU1971766 lncRNA downstream 179035 26063842 ~ 26095905 (+) False il15ra
TU1971764 lncRNA downstream 203825 26088632 ~ 26088939 (+) True il15ra
TU1971824 lncRNA downstream 221134 26105941 ~ 26106170 (+) True G1721125
XM_021577303.2 mRNA upstream 1075 25871821 ~ 25875841 (+) True LOC110500127
XR_002470065.2 mRNA upstream 104035 25768886 ~ 25772881 (+) True LOC110500123
XM_021577294.2 mRNA upstream 1085349 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA upstream 1085349 24787487 ~ 24791567 (+) True LOC110500118
XM_021577289.2 mRNA upstream 1132032 24659831 ~ 24744884 (+) False LOC110500114
XM_036957445.1 mRNA downstream 7066 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 7066 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 46783 25931590 ~ 25977279 (+) False sfmbt2
XM_021577309.2 mRNA downstream 46783 25931590 ~ 25977279 (+) False sfmbt2
XM_021577311.2 mRNA downstream 46783 25931590 ~ 25977279 (+) False sfmbt2
TU1971515 other upstream 240327 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 264648 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1559378 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1582119 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 1740593 24135764 ~ 24136323 (+) True G1719268
TU1971779 other downstream 153495 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 444967 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 936840 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2437713 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2456694 28341501 ~ 28343734 (+) False LOC110500183

Expression Profile