RNA id: TU1971911



Basic Information


Item Value
RNA id TU1971911
length 308
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1721200
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26260310 ~ 26260617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgatcacgctctccgtagccgacgtcagtaagaccttaaaacaggtcaacaatcacaaggccgctgggccagacggattacctggacgggtgctccgggcatgtgctgaccaactggcaagtgtcttcactgacattttcaatctgtcACTGATTGAGGCTGTAACaccaacatatttcaagcagaccaccatagtccctgtgcccaacaacactaaggtaacttgcctaaatgactaccgacccatagcactcacgtctgtagccatgaagtgctgtgataggctggtcatggctcacattaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1971904 lncRNA upstream 2569 26257511 ~ 26257741 (+) True G1721194
TU1971903 lncRNA upstream 3814 26255668 ~ 26256496 (+) True G1721193
TU1971902 lncRNA upstream 5604 26254074 ~ 26254706 (+) True G1721192
TU1971901 lncRNA upstream 8801 26251187 ~ 26251509 (+) True G1721191
TU1971899 lncRNA upstream 11265 26248504 ~ 26249045 (+) True G1721189
TU1971912 lncRNA downstream 514 26261131 ~ 26261359 (+) True G1721201
TU1971914 lncRNA downstream 2059 26262676 ~ 26263035 (+) True G1721203
TU1971915 lncRNA downstream 2707 26263324 ~ 26263671 (+) True G1721204
TU1971916 lncRNA downstream 3355 26263972 ~ 26264269 (+) True G1721205
TU1971918 lncRNA downstream 4993 26265610 ~ 26265857 (+) True G1721207
XM_036957456.1 mRNA upstream 12567 26238009 ~ 26247743 (+) False mcm10
XM_036957457.1 mRNA upstream 12567 26238021 ~ 26247743 (+) False mcm10
XM_036957458.1 mRNA upstream 12567 26238214 ~ 26247743 (+) False mcm10
XM_036957459.1 mRNA upstream 12567 26238291 ~ 26247743 (+) True mcm10
XM_036957460.1 mRNA upstream 23097 26230264 ~ 26237213 (+) True LOC110500144
XM_021577334.2 mRNA downstream 5525 26266142 ~ 26301475 (+) False LOC110500147
XM_036957469.1 mRNA downstream 5525 26266142 ~ 26301475 (+) False LOC110500147
XM_036957468.1 mRNA downstream 9406 26270023 ~ 26301475 (+) True LOC110500147
XM_021577337.2 mRNA downstream 55917 26316534 ~ 26324591 (+) False LOC110500149
XM_036957472.1 mRNA downstream 55917 26316534 ~ 26324591 (+) False LOC110500149
TU1971779 other upstream 218467 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 623721 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 648042 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1942772 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1965513 24277831 ~ 24294797 (+) True adm2a
TU1971907 other downstream 69157 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 561030 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2061903 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2080884 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2080884 28341501 ~ 28342796 (+) False LOC110500183

Expression Profile