RNA id: TU1971918


Basic Information

Item Value
RNA id TU1971918
length 248
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1721207
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26265610 ~ 26265857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattaagcaaaccagattgcAACATCTTCTTGTATTTTTAATGTATGGATAGCCAAGGgtacaccaacactcagacaaaATTTACagatgaagcatgtgtgtttagtctgccagatcagaggcaataaggatgaccagggatgttttcttaaTTAGTGTGTGAAAACAGACAATTTgactgtcctgctaagcattcaaaatgtaatgagtacttttgggtgtcagggaaaatgcatggagtaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971916 lncRNA upstream 1341 26263972 ~ 26264269 (+) True G1721205
TU1971915 lncRNA upstream 1939 26263324 ~ 26263671 (+) True G1721204
TU1971914 lncRNA upstream 2575 26262676 ~ 26263035 (+) True G1721203
TU1971912 lncRNA upstream 4251 26261131 ~ 26261359 (+) True G1721201
TU1971911 lncRNA upstream 4993 26260310 ~ 26260617 (+) True G1721200
TU1971959 lncRNA downstream 105975 26371832 ~ 26379091 (+) True G1721246
TU1972023 lncRNA downstream 186583 26452440 ~ 26453819 (+) True G1721294
TU1972012 lncRNA downstream 232933 26498790 ~ 26514372 (+) False G1721289
TU1972016 lncRNA downstream 240176 26506033 ~ 26514372 (+) True G1721289
TU1972072 lncRNA downstream 266095 26531952 ~ 26532250 (+) True G1721338
XM_036957456.1 mRNA upstream 17867 26238009 ~ 26247743 (+) False mcm10
XM_036957457.1 mRNA upstream 17867 26238021 ~ 26247743 (+) False mcm10
XM_036957458.1 mRNA upstream 17867 26238214 ~ 26247743 (+) False mcm10
XM_036957459.1 mRNA upstream 17867 26238291 ~ 26247743 (+) True mcm10
XM_036957460.1 mRNA upstream 28397 26230264 ~ 26237213 (+) True LOC110500144
XM_021577334.2 mRNA downstream 285 26266142 ~ 26301475 (+) False LOC110500147
XM_036957469.1 mRNA downstream 285 26266142 ~ 26301475 (+) False LOC110500147
XM_036957468.1 mRNA downstream 4166 26270023 ~ 26301475 (+) True LOC110500147
XM_021577337.2 mRNA downstream 50677 26316534 ~ 26324591 (+) False LOC110500149
XM_036957472.1 mRNA downstream 50677 26316534 ~ 26324591 (+) False LOC110500149
TU1971779 other upstream 223767 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 629021 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 653342 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1948072 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1970813 24277831 ~ 24294797 (+) True adm2a
TU1971907 other downstream 63917 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 555790 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2056663 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2075644 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2075644 28341501 ~ 28342796 (+) False LOC110500183

Expression Profile