RNA id: TU1972016


Basic Information

Item Value
RNA id TU1972016
length 1591
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G1721289
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26498790 ~ 26514372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTGTAATGGGGTGATCTGACCATATAAGCTGTTATGTCATTAATGTTTAAACTCTGGGAGAGTTGTGGTTGGCCCAGGGGACAGAGTTAAATGGTCTTTGTCCGAGAACACACCACGACTATGACTGAGAGAGCAATCTGCCATAAGTGTTTTCTTTTCGAGAGGATCGTTTGTGAGAAACGTGTACAGAATGCAGTAAGCGTTATAGCTGGTGCCTGGATTTGTAGTGTGCTGTCATGACTGACAGTTAGTTGGCTGGTTTCATAGATGTATGTAGGCGAGCTAATCAGCTAACATTCTGTGGGTGTGTAGGTGACAAGACACTGAAAGCGTGCTTAGCCAATATTCCTCTGTATTCCAGTATCCTATTGTAGAgtaatagcattataaatatgcATAGGTAATTAGTGCTTCTAATTTATGCTAAGAATCAATTCATTACGACTTTAAGTATATGCTATTAGTTTCAATACGTGATTCATAATCATAAACGTATGATGGGCAATTAGACACTGTGTATAGAATCTTTTTTCCCACAGTGCAGAGACAATATAAGAACTCATTGGTAGGTAAATGCATGCTACAGTGTATGTAAAAACAATATCTGTAGTTGTGGACCAACATGTGgtatttgtattgtattgtaaataGGAAATCATTTAGCACAGTTAAATAACGTGGTTTGTTGATTTGAGAGCAGTTCTAGATTGAGTAGAGGCTTCTTTTTGAATTGGCTGAACACAGCCAGTGCATGAATAGTGTATATGTGTATGAGACCGTAACATGTTTAGATATTGCATGTTAGACTTATTAACTTGCATGCCAATAGATGAGTAGATCTAGTCCCGTGTAGTCACAGTAATTTCAGCCAATCCATTTTGACCTTATTAATGCATGACTAATCAGAAtcatttgtgattttttttctctctcactatgtCCGTCTCTCTTAGTTGATTTACTACTTTACTGGGTTGTCACTATTAATATTTTCACTTTGGTTTCATAcagtctattctactctattgtactctactttattctactttTCTTCTTCAATTGTCTGGTCTCTACAGTGTGTATAGATTTATGTGGTATTTATCTTCTCTGCTGTGCTTCAAATACTGTAAATTCCACTGACTGTGTATTTTCTTTTTACCCAGCTTCTATTCCAGCATGGAAGCTTAAACAATAAGGGAGAGACACATTACGGAAACTATTCTACATGTTAAAACAACCTGTGCTCTTAACTAGAAACTGGCTGCTGCTCACTGCATGTGATGATGTGAagtttgacctttgacctcatgtaaagctgctgctcattctgtatgtctctctgtctgggtctgtgtgaCATGGCTACTGTCAATGTCTGTTTTATGCGGTGCTGAATCTGATTTAGCCATAGTCTCTACTACAACACCTTGCCAGTCAATGTCTCTATGAGCTTTTATGGGTTAATGAGAATATTGTGAGTATTTTGGTAAATAGGCTGTACATTTTGTAAATGAACTGAGAAATAAAAGTAGTTtatccttattctctctctctctctctctctaaactcagcaaaaaaagaaacgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1972023 lncRNA upstream 52214 26452440 ~ 26453819 (+) True G1721294
TU1971959 lncRNA upstream 126942 26371832 ~ 26379091 (+) True G1721246
TU1971918 lncRNA upstream 240176 26265610 ~ 26265857 (+) True G1721207
TU1971916 lncRNA upstream 241764 26263972 ~ 26264269 (+) True G1721205
TU1971915 lncRNA upstream 242362 26263324 ~ 26263671 (+) True G1721204
TU1972072 lncRNA downstream 17580 26531952 ~ 26532250 (+) True G1721338
TU1972084 lncRNA downstream 29047 26543419 ~ 26543829 (+) True G1721350
TU1972726 lncRNA downstream 181739 26696111 ~ 26749099 (+) True G1721900
TU1972832 lncRNA downstream 257254 26771626 ~ 26771944 (+) True G1722002
TU1972860 lncRNA downstream 271811 26786183 ~ 26786536 (+) True G1722030
XM_021577346.2 mRNA upstream 66414 26428656 ~ 26439619 (+) False ncaph2
XM_021577347.2 mRNA upstream 66414 26428656 ~ 26439619 (+) True ncaph2
XM_036957476.1 mRNA upstream 172069 26324764 ~ 26333964 (+) False cep83
XM_036957487.1 mRNA downstream 6039 26520411 ~ 26618210 (+) False LOC110500158
XM_036957488.1 mRNA downstream 6039 26520411 ~ 26618210 (+) False LOC110500158
XM_036957489.1 mRNA downstream 6039 26520411 ~ 26618210 (+) False LOC110500158
XM_036957494.1 mRNA downstream 6039 26520411 ~ 26618210 (+) False LOC110500158
XM_036957490.1 mRNA downstream 6040 26520412 ~ 26618210 (+) False LOC110500158
TU1971907 other upstream 174940 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 464190 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 869444 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 893765 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2188495 24316638 ~ 24317538 (+) True LOC110500097
TU1972909 other downstream 307275 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1808148 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1827129 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1827129 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1827129 28341501 ~ 28342847 (+) False LOC110500183

Expression Profile