RNA id: TU1972890



Basic Information


Item Value
RNA id TU1972890
length 259
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1722060
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26808425 ~ 26808683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtagcgccggctaccgcaaaatctgttgtttacgtgtcgtgctggtattttggggggtgcatgctatcagataatagcttctcatgctttcgccgaaaagcattttacaaatctgacttggtggctagattcacaacgagtgtagctttaattcagtaccttgcatgtgtgttttaatgaaagtttgagatttaacgagtactaagtaaagtactataggtggcgctctgaaatttccgctgagcggtCCCTGTAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1972860 lncRNA upstream 21889 26786183 ~ 26786536 (+) True G1722030
TU1972832 lncRNA upstream 36481 26771626 ~ 26771944 (+) True G1722002
TU1972726 lncRNA upstream 59326 26696111 ~ 26749099 (+) True G1721900
TU1972084 lncRNA upstream 264596 26543419 ~ 26543829 (+) True G1721350
TU1972072 lncRNA upstream 276175 26531952 ~ 26532250 (+) True G1721338
TU1972906 lncRNA downstream 10126 26818809 ~ 26819040 (+) True G1722076
TU1972907 lncRNA downstream 10682 26819365 ~ 26819599 (+) True G1722077
TU1972926 lncRNA downstream 23256 26831939 ~ 26844071 (+) False G1722095
TU1972927 lncRNA downstream 23256 26831939 ~ 26841384 (+) True G1722095
TU1972970 lncRNA downstream 53847 26862530 ~ 26862966 (+) True kcnd2
XM_036957491.1 mRNA upstream 190215 26520412 ~ 26618210 (+) False LOC110500158
XM_021577352.2 mRNA downstream 53613 26862296 ~ 27012894 (+) False kcnd2
XM_036957498.1 mRNA downstream 53613 26862296 ~ 27012894 (+) False kcnd2
XM_021577354.2 mRNA downstream 239280 27047963 ~ 27060560 (+) True LOC110500161
XM_036957503.1 mRNA downstream 258255 27066938 ~ 27150379 (+) True cped1
XM_036957506.1 mRNA downstream 343918 27152601 ~ 27161037 (+) True LOC110500163
TU1971907 other upstream 477332 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 766582 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 1171836 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 1196157 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2490887 24316638 ~ 24317538 (+) True LOC110500097
TU1972909 other downstream 12964 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1513837 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1532818 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1532818 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1532818 28341501 ~ 28342847 (+) False LOC110500183

Expression Profile