RNA id: TU1972906



Basic Information


Item Value
RNA id TU1972906
length 232
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1722076
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26818809 ~ 26819040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTGTAATTTTCAGTGTTAGCCTGCTGTGGTGTGCTATTATGGAAAGAATGCATTTGTGAACGCAGGGTAACCTCAGCTATGCCAgatctgtgtgtcagagtgtgtgtgcagtgtgttatTTCCAAAAGCCATTTATGGAGTCAATGCATCAAGCAGCCATTCTAGAGCCCTCTTCTTTTTCTTCACACAAACCATGGAGCATTTGACTTTGGAATTTGGAATGTCTTACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1972890 lncRNA upstream 10126 26808425 ~ 26808683 (+) True G1722060
TU1972860 lncRNA upstream 32273 26786183 ~ 26786536 (+) True G1722030
TU1972832 lncRNA upstream 46865 26771626 ~ 26771944 (+) True G1722002
TU1972726 lncRNA upstream 69710 26696111 ~ 26749099 (+) True G1721900
TU1972084 lncRNA upstream 274980 26543419 ~ 26543829 (+) True G1721350
TU1972907 lncRNA downstream 325 26819365 ~ 26819599 (+) True G1722077
TU1972926 lncRNA downstream 12899 26831939 ~ 26844071 (+) False G1722095
TU1972927 lncRNA downstream 12899 26831939 ~ 26841384 (+) True G1722095
TU1972970 lncRNA downstream 43490 26862530 ~ 26862966 (+) True kcnd2
TU1973113 lncRNA downstream 312039 27131079 ~ 27192001 (+) True G1722273
XM_036957491.1 mRNA upstream 200599 26520412 ~ 26618210 (+) False LOC110500158
XM_021577352.2 mRNA downstream 43256 26862296 ~ 27012894 (+) False kcnd2
XM_036957498.1 mRNA downstream 43256 26862296 ~ 27012894 (+) False kcnd2
XM_021577354.2 mRNA downstream 228923 27047963 ~ 27060560 (+) True LOC110500161
XM_036957503.1 mRNA downstream 247898 27066938 ~ 27150379 (+) True cped1
XM_036957506.1 mRNA downstream 333561 27152601 ~ 27161037 (+) True LOC110500163
TU1971907 other upstream 487716 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 776966 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 1182220 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 1206541 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2501271 24316638 ~ 24317538 (+) True LOC110500097
TU1972909 other downstream 2607 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1503480 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1522461 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1522461 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1522461 28341501 ~ 28342847 (+) False LOC110500183

Expression Profile