RNA id: TU1972927



Basic Information


Item Value
RNA id TU1972927
length 337
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1722095
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26831939 ~ 26844071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTTATAGAGTTATTGTAAATAACTCATGAGTCAGGCCTTCTTAAAATACCATTTTGTCCAAGAAAGGACTGGTGCCCTATTAATCATTTCATAGTAATAAGTGTACACAGCTGGGAaacagaatgtttccattgttcagtcagacagcagaatgtttccattgttcactcagacagcagaatgtttccattgttcagtcagacagcagagtgtttccattgttcactcagacagcagtgtttccattgttcactcagacagcagaatgtttccattgttcactcagacagcagaatgtttccattgttcactcagacagcagaatgtttccattg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1972907 lncRNA upstream 12340 26819365 ~ 26819599 (+) True G1722077
TU1972906 lncRNA upstream 12899 26818809 ~ 26819040 (+) True G1722076
TU1972890 lncRNA upstream 23256 26808425 ~ 26808683 (+) True G1722060
TU1972860 lncRNA upstream 45403 26786183 ~ 26786536 (+) True G1722030
TU1972832 lncRNA upstream 59995 26771626 ~ 26771944 (+) True G1722002
TU1972970 lncRNA downstream 21146 26862530 ~ 26862966 (+) True kcnd2
TU1973113 lncRNA downstream 289695 27131079 ~ 27192001 (+) True G1722273
TU1973148 lncRNA downstream 391747 27233131 ~ 27233392 (+) True G1722308
TU1973153 lncRNA downstream 397100 27238484 ~ 27239624 (+) True G1722313
TU1973164 lncRNA downstream 409770 27251154 ~ 27252736 (+) True G1722323
XM_036957491.1 mRNA upstream 213729 26520412 ~ 26618210 (+) False LOC110500158
XM_021577352.2 mRNA downstream 20912 26862296 ~ 27012894 (+) False kcnd2
XM_036957498.1 mRNA downstream 20912 26862296 ~ 27012894 (+) False kcnd2
XM_021577354.2 mRNA downstream 206579 27047963 ~ 27060560 (+) True LOC110500161
XM_036957503.1 mRNA downstream 225554 27066938 ~ 27150379 (+) True cped1
XM_036957506.1 mRNA downstream 311217 27152601 ~ 27161037 (+) True LOC110500163
TU1972909 other upstream 10004 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 500846 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 790096 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 1195350 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 1219671 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 1481136 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1500117 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1500117 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1500117 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 1500117 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile