RNA id: TU1973484


Basic Information

Item Value
RNA id TU1973484
length 223
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1722622
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27706586 ~ 27706808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctttaacttcctgacagatgtcttgagatgttgcttcaatatatccagatacttttcctacctcatgatgccatctattttgtgacttgcaccagtccctcctgcagcaaagcacccccacaacattatgctgccacccccgtgcttcacggttgggatggtgttcttcaggttgcaagcctccccctttttcctccaaacattacgatggtcattatggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1973481 lncRNA upstream 2499 27703759 ~ 27704087 (+) True G1722619
TU1973474 lncRNA upstream 15629 27690730 ~ 27690957 (+) True G1722612
TU1973439 lncRNA upstream 58098 27647402 ~ 27648488 (+) True G1722581
TU1973437 lncRNA upstream 59305 27644345 ~ 27647281 (+) True G1722579
TU1973423 lncRNA upstream 80366 27625020 ~ 27626220 (+) True G1722565
TU1973488 lncRNA downstream 5585 27712393 ~ 27712634 (+) True G1722626
TU1973466 lncRNA downstream 8621 27715429 ~ 27719033 (+) True G1722607
TU1973492 lncRNA downstream 22997 27729805 ~ 27730059 (+) True G1722630
TU1973516 lncRNA downstream 56222 27763030 ~ 27766206 (+) False G1722654
TU1973517 lncRNA downstream 56222 27763030 ~ 27767440 (+) False G1722654
XM_036957529.1 mRNA upstream 20626 27656376 ~ 27685960 (+) True LOC110500177
XM_021577361.2 mRNA upstream 394977 27309199 ~ 27311609 (+) True LOC110500167
XM_036957507.1 mRNA upstream 495737 27170703 ~ 27210849 (+) False stab2
XM_036957508.1 mRNA upstream 495737 27170703 ~ 27210849 (+) True stab2
XM_036957506.1 mRNA upstream 545549 27152601 ~ 27161037 (+) True LOC110500163
XM_021577383.2 mRNA downstream 183657 27890465 ~ 27902897 (+) True LOC110500180
XM_021577384.2 mRNA downstream 198273 27905081 ~ 27923178 (+) True LOC110500181
XM_021577385.2 mRNA downstream 231011 27937819 ~ 27954437 (+) True LOC110500182
XR_005038564.1 mRNA downstream 547817 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA downstream 548174 28254982 ~ 28257603 (+) False LOC118942914
TU1972909 other upstream 884651 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1375493 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 1664743 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2069997 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2094318 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 615712 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 634693 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 634693 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 634693 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 634693 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile