RNA id: TU1973517


Basic Information

Item Value
RNA id TU1973517
length 3545
lncRNA type antisense_over
GC content 0.43
exon number 6
gene id G1722654
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27763030 ~ 27767440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCTTCTGCTActgttttatttgaatttgttctttactggatTTTCATGGACCAAACAATGGCAAAACACTGTGATACAGTTTCTCTCTTTGGGTACAACCGACTAACACAAACGTAAAAATTATCCCTCTATAAAATGGACTAAagtacctacatacagtatctctctttctccacctcgaTCTCACAAGCTactcacacacggacacacgctgtctcattctctcacacacatacacagaacatgCACTCTTTCTGTatcacactgtctcacacacgcacacacacacacacgcacacaatagAATACATTCTCCGGAAAAGTCAGTCATACATGGTTTTGCATTTCATACCGTTTTTCATCATCATCAAACACACTAAACGCCCAAAACATCCCTCAACAGGAAGTGGGCGCATCGTACCAACATTAGCTACACCTCTGCAGGCGGCAACCATTTTGAGTGGACTGAGTGGACAAACACCTTGGTTGCATCTGAAAACATTATTAGCTGTCAAATCCATGCTTCCTCCACCCTTGTTAGCTCAAATCCACTCAAAGCTCATTGGAGGAGAGGTTGCAAGGTCCCTCCCCCGGACCACCTCCTCCAATGAGCTTTGATTTGAAGACCAGTAACATTTTCTGACACAACCCTACATGGGCCAAGTTATCATTCTGATTTGAGAGATTTTTGTAATGTCCTTGTGTAGAGATTCTGTCAAACAGAACACTGACACCTCATCAGAAGAAACTGCTCTACACACAACAGTGGGGGTCACAATTAGACTGGGCTGAACAGGTCCTGGATCAGTGCTAGGGCATAATGCAGAATTTATGAATGAGTGACTATATCTGTTCCCATATCAGTGGCCTTCAGTATATGGCCTCTAGGTAAGAAGATACAAGCCAGATAATTATGCTTATCATTCTTGTGCCCAGCACAAAGAATTTAAGTTGTTTATAACcgtgtagtagtggagtattaGCAGTTTAATAGGTGTGTAATAGATGTACtgtttataaactgggtggctcgagccctgaatgctgattggctcgagccctgaatgctgattggctgacaggtatatcagaccgtatgccacgggtatgacaaaacatgtatttatactgctgtaattacattggtaaccagtttataatggcaataaggcacctcgggggtttgtggtatattgccaatataccacaccccctcgggccttattgaaCGATGAAAGTCATATTTTGTCAGAACGTTTTACTACTTGAGGTCAGTTTGGGCTCTTTCTGGGTTATGGTTACAGTTGCAAGTGCTATGTACATACAGATACTCTCATAGACATCACAATACTTTCAAACAGACCTCTGTCCCTCTGCTACTACATTCACCTCCAAATCAACAGTCTCGTCATCATACAATACATATTTGCTCCACTTGCATTGTGCAGAAATATAAACAAACTAACAGATGTGTTATAGATATTAAATCAACAGTCTAGGTTGATGACTTACAGAAACTGGGAGAAGTCCAAATAGGACAGATTGAGAGTGGACACTCGTAAAAAGCAGGTGGTTTTGAGTGTGCACTTAGTGCCATCATTAAAGAAGCTTTACACAAAACACCCCTTTCCTCTGGCAGCTAGTCAGGAGAGTCTTTAAGGGATGAGGCAGAGTTAGTAGATGGGAGCACACACACAACTAAAATAGTAGTGGGTCGTTAAGGACATTTCCCTTTAAATGATTACTTACTGGCAATACTGCTTTTCAGGCCAAATGGGTGGATTTGACGGTGTCTGTCTAAAGATATTGAATGCTGGGTTTTTTTGTTGTGAGAACAAAAGGGGACAtatttttgtctctctcttttgctACAACCAAGGTGAAACATTTCTATACAACACAAAACATAAGGAATAATGTAACTTAGATTTTTTTCTACAGTTCACAATATAAAAATTCAAGTGCAATTAAAGTTCCAAATATGAGTTACATCACATACATTTCTCTCTATAGCAACGTCTGTTACTTGCAGGTAGTTTTTTTCATCTTGTTATATATCTttcaaaataaaattaaaaagcGACTTTTTTGAAAATCAAACTTATTCGTTCACTGTACTCAGTTTGAGGTGGAATGGTCTTGGATGCTGAAATTAGAAATGTCTTTCGAAACGATTTCCCATGTGAAAATGTGGATGTAAAATATGATTTAAGTGCACCAATCGTTTTTTTTTGGGTGCACGCCAGGGGCCtttcaaaataacaaaataaagatACATCAATGTACCTGCGTGTGACGTCACTCTCGCACACCATCTACGTGCACATACGTatgctcacacaaacacaaatatacatacgtacatacatacacatacattttACTTGTAGCCAACATGTCTGTATACGTACATATATATCAAACATCCATGTTGTGGGCTTCTGCAAGTTCTAACACATATAAAtataaccaaaacaacaacaacaacacaaaaacaaaccaAACCAGAAGTACAGGGGGAAAGATGGAAATGAGGACTGCAGACAAAAAGAGGGAGACGGTTCTCTGTTCCTGTGCAGGGAATGCTGGGATAGCGAGCACGAGGAACTCCTGGTAGGGTTGGGGGTGTAAGAGAAGTATATTGGTGTAGAAGAAGTGTTTCAGAGTAGAGGGGGTGTAGAAGAGAGGGATAGATTGGCGGGTTGGGTTGTAGGAGAGATGTAGGGGTATAGACGTGGGGGAGTAGAAGACATATGAGGATGTTGACAGGGGTAAGGACgtaggtgaagaggagggaggagtagatggTGGAAAGGGGACGTTGGATAAGCATAAGGGGTAAGTAAGCGACTGGGTAACAAACAGGGGGCGTGGCAGTTTATTTGTACGGCCGTAGGAACCGTGTGACTTTGGAGCGCAGCAGCTTGATGAACGAGCGGGGGAACATGTCTTTGGACTCCTGTGCCGTGTACCTGAAGTAGTTCTGGGGGTGAGCCAGAACATCAAACAGGGCTTTGATCAGTTTTTTATcTTTTAGTATCTCTTGGTGATTCTCTGATGCGTAGAGTCTGCCGTCCCGGACAATGTCCTCTATCAGCTGCTGGTAGTCCTCATCATAGGTGACATAAGGGACTTGGAAGCCCTTGCCGCTGTTGCCCTCATTGGACTTGAATTGGATCCAGAGCTTGCGTGAGCGGGAGGTGAAGGCGATTGGTCGCTCGTACGTCTGACACGTCTCATAGGTGGTGATGGAGGTGGGCAGGGCACTCTTCCTCATGACGAGCACGTCTCCACACTCGTCTTCGATTGGGAGGAAGATCTCAGGCACCACGATGAGGATGCGTCTCTTGTGAGGGGGGTTGATGGTCCAGATACAGTCTACATTGGAGGGGTAGTCCCCGGGGTAGTTAGGAGACTCAATAAAGCCTGTAAAGTCCCCCAGCTCACCGCCACACACCTGGTCTGAGACAGGGAGAAGAGACTTGGATGAGTCAGGAAGCACTGGAGACCATGGCTTTGAATTGAACTAATTTAGCAGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1973492 lncRNA upstream 32971 27729805 ~ 27730059 (+) True G1722630
TU1973466 lncRNA upstream 43997 27715429 ~ 27719033 (+) True G1722607
TU1973488 lncRNA upstream 50396 27712393 ~ 27712634 (+) True G1722626
TU1973484 lncRNA upstream 56222 27706586 ~ 27706808 (+) True G1722622
TU1973481 lncRNA upstream 58943 27703759 ~ 27704087 (+) True G1722619
TU1973538 lncRNA downstream 53006 27820446 ~ 27821563 (+) True G1722671
TU1973628 lncRNA downstream 234827 28002267 ~ 28023525 (+) False G1722756
TU1973629 lncRNA downstream 234827 28002267 ~ 28011387 (+) True G1722756
TU1973660 lncRNA downstream 314830 28082270 ~ 28082564 (+) True G1722784
TU1973675 lncRNA downstream 351575 28119015 ~ 28119380 (+) True G1722799
XM_036957529.1 mRNA upstream 77070 27656376 ~ 27685960 (+) True LOC110500177
XM_021577361.2 mRNA upstream 451421 27309199 ~ 27311609 (+) True LOC110500167
XM_036957507.1 mRNA upstream 552181 27170703 ~ 27210849 (+) False stab2
XM_036957508.1 mRNA upstream 552181 27170703 ~ 27210849 (+) True stab2
XM_036957506.1 mRNA upstream 601993 27152601 ~ 27161037 (+) True LOC110500163
XM_021577383.2 mRNA downstream 123025 27890465 ~ 27902897 (+) True LOC110500180
XM_021577384.2 mRNA downstream 137641 27905081 ~ 27923178 (+) True LOC110500181
XM_021577385.2 mRNA downstream 170379 27937819 ~ 27954437 (+) True LOC110500182
XR_005038564.1 mRNA downstream 487185 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA downstream 487542 28254982 ~ 28257603 (+) False LOC118942914
TU1972909 other upstream 941095 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1431937 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 1721187 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2126441 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2150762 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 555080 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 574061 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 574061 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 574061 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 574061 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile