RNA id: TU1973675



Basic Information


Item Value
RNA id TU1973675
length 222
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G1722799
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28119015 ~ 28119380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAGGTATGgtggtatggaggtatggaggtatggtggTTTGGAGGTATGTAGGTATGGTGGTATGGCGGTATGGCGGTACGGAGGTACGGTGGtttggaggtatggagGTATGGTGGTTTGGAGGTACGGTGGTTTGGAGGTACGGAGGTACGGTGGTTTGGAGGTATGGTGGTTTGGAGGTACGGTGGTTTGGAGATACGGAGGTACGGTGGTTTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1973660 lncRNA upstream 36451 28082270 ~ 28082564 (+) True G1722784
TU1973628 lncRNA upstream 95490 28002267 ~ 28023525 (+) False G1722756
TU1973629 lncRNA upstream 107628 28002267 ~ 28011387 (+) True G1722756
TU1973538 lncRNA upstream 297452 27820446 ~ 27821563 (+) True G1722671
TU1973517 lncRNA upstream 351575 27763030 ~ 27767440 (+) False G1722654
TU1973712 lncRNA downstream 67880 28187260 ~ 28187624 (+) True G1722834
TU1973722 lncRNA downstream 81126 28200506 ~ 28200736 (+) True G1722842
TU1973731 lncRNA downstream 106080 28225460 ~ 28225680 (+) True G1722851
TU1973738 lncRNA downstream 117004 28236384 ~ 28236599 (+) True G1722858
TU1973743 lncRNA downstream 123910 28243290 ~ 28243497 (+) True G1722863
XM_021577385.2 mRNA upstream 164578 27937819 ~ 27954437 (+) True LOC110500182
XM_021577384.2 mRNA upstream 195837 27905081 ~ 27923178 (+) True LOC110500181
XM_021577383.2 mRNA upstream 216118 27890465 ~ 27902897 (+) True LOC110500180
XM_036957529.1 mRNA upstream 433055 27656376 ~ 27685960 (+) True LOC110500177
XM_021577361.2 mRNA upstream 807406 27309199 ~ 27311609 (+) True LOC110500167
XR_005038564.1 mRNA downstream 135245 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA downstream 135602 28254982 ~ 28257603 (+) False LOC118942914
XM_036957539.1 mRNA downstream 191638 28311018 ~ 28335924 (+) False LOC110501048
XM_036957540.1 mRNA downstream 191638 28311018 ~ 28335924 (+) False LOC110501048
XM_036957542.1 mRNA downstream 191638 28311018 ~ 28335924 (+) False LOC110501048
TU1972909 other upstream 1297080 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1787922 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 2077172 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2482426 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2506747 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 203140 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 222121 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 222121 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 222121 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 222121 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile


TU1973675 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

TU1973675 Expression in each Bioproject

Bar chart with 6 bars.
TU1973675 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.