RNA id: TU1974501


Basic Information

Item Value
RNA id TU1974501
length 400
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1723558
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28266593 ~ 28266992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccagtacctgccgctgaaaaacatctccacagcatgatgctgccactaccatgcttcaccgtagggatggtgccaggtttcctccagatgtgacgcttggcattcaggtcaaagagttcaatcttgatttcatcagaccagagaatcttgtttctcatggtttgagtccttcaggtgccttttggcaaactccaagcgggctgtcatgtgccttttattgaggagagCCTaatgtctggccactctaccgtaaaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactccaattaaggtgttgaaacatctcaaggataatcaatggaaacaggatgcgccaGAGCACAATATctagtctcatatcaaagggtttgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1973749 lncRNA upstream 9392 28254592 ~ 28257201 (+) True LOC118942914
TU1973743 lncRNA upstream 23096 28243290 ~ 28243497 (+) True G1722863
TU1973738 lncRNA upstream 29994 28236384 ~ 28236599 (+) True G1722858
TU1973731 lncRNA upstream 40913 28225460 ~ 28225680 (+) True G1722851
TU1973722 lncRNA upstream 65857 28200506 ~ 28200736 (+) True G1722842
TU1974519 lncRNA downstream 7379 28274371 ~ 28274634 (+) True G1723566
TU1974521 lncRNA downstream 9320 28276312 ~ 28276674 (+) True G1723568
TU1974561 lncRNA downstream 73191 28340183 ~ 28345660 (+) False G1723600
TU1974562 lncRNA downstream 73191 28340183 ~ 28340927 (+) True G1723600
TU1974571 lncRNA downstream 136960 28403952 ~ 28406128 (+) True G1723608
XR_005038564.1 mRNA upstream 8990 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA upstream 8990 28254982 ~ 28257603 (+) False LOC118942914
XM_021577385.2 mRNA upstream 312156 27937819 ~ 27954437 (+) True LOC110500182
XM_021577384.2 mRNA upstream 343415 27905081 ~ 27923178 (+) True LOC110500181
XM_021577383.2 mRNA upstream 363696 27890465 ~ 27902897 (+) True LOC110500180
XM_036957539.1 mRNA downstream 44026 28311018 ~ 28335924 (+) False LOC110501048
XM_036957540.1 mRNA downstream 44026 28311018 ~ 28335924 (+) False LOC110501048
XM_036957542.1 mRNA downstream 44026 28311018 ~ 28335924 (+) False LOC110501048
XM_036957543.1 mRNA downstream 44026 28311018 ~ 28335924 (+) False LOC110501048
XM_036957541.1 mRNA downstream 44027 28311019 ~ 28335924 (+) False LOC110501048
TU1972909 other upstream 1444658 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1935500 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 2224750 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2630004 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2654325 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 55528 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 74509 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 74509 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 74509 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 74509 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile